Carassius gibelio (silver crucian carp): 127968591
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Entry
127968591 CDS
T08819
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127968591
09122 Translation
03013 Nucleocytoplasmic transport
127968591
03015 mRNA surveillance pathway
127968591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127968591
03041 Spliceosome [BR:
cgib03041
]
127968591
03009 Ribosome biogenesis [BR:
cgib03009
]
127968591
03012 Translation factors [BR:
cgib03012
]
127968591
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127968591
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127968591
mRNA cycle factors
Stress granule specific factors
127968591
Spliceosome [BR:
cgib03041
]
Complex C
Other components
EJC/TREX
127968591
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
90S particles
Helicases
127968591
Translation factors [BR:
cgib03012
]
Eukaryotic type
Initiation factors
eIF-4
127968591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
127968591
NCBI-ProteinID:
XP_052425848
LinkDB
All DBs
Position
B11:complement(24830359..24837020)
Genome browser
AA seq
406 aa
AA seq
DB search
MDTAAVPVRKRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHTCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgccgcagtccccgttaggaagagactcctgaaggaggaagacatgacgaaa
atcgagtttgagacgagcgaagaggtggatgtgacgccgacgttcgacacgatgggcctg
agggaagatctgctgcgcgggatctacgcgtacggttttgagaaaccgtcagccatccag
cagcgagccatcaaacagatcatcaaggggcgagacgtgatcgcccagtcacagtctgga
accggtaaaacagccacgttctgtatctcagtgctgcagtgtttggatattcaggttcga
gagactcaagcgctgatcctggctccgaccagagagttagccggacagatccagaaggtg
ctgctggcgttgggcgactacatgaacgttcagtgtcacacctgcatcggaggcacaaac
gtgggcgaggacatcaggaagctggactacggtcagcacgtggtggctgggacgcccggc
cgagtgttcgatatgatccgcaggaggagtttgaggactcgtgccatcaagatgctggtg
ctggatgaagcagacgagatgctcaacaaaggttttaaggagcagatctatgatgtgtac
agatacctgcctcctgccactcaggtgtgtctcatcagcgccacgctgccgcacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgaa
ttgactctggaggggattaagcagtttttcgtggccgtggagcgagaggagtggaagttc
gacacgctgtgtgacctttacgacacgctgaccatcacacaagccgtcatcttctgcaac
accaaacgcaaggtggactggctgacggagaagatgagggaggctaacttcaccgtgtcg
tcgatgcacggagacatgccacagaaagagcgagagtccatcatgaaggagttcagatct
ggagccagtcgagtgctgatctccacagacgtttgggccagaggtctggatgtgcctcag
gtgtctctcatcattaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggtcgatcgggtcgttacggcaggaaaggtgtggccatcaactttgtgaagaacgatgac
atccgcatcctgcgagatattgagcagtactactccacacagatcgacgagatgcccatg
aacgtggctgacctgatctga
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