Carassius gibelio (silver crucian carp): 127969044
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Entry
127969044 CDS
T08819
Name
(RefSeq) DNA mismatch repair protein Msh2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127969044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127969044
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127969044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
127969044
NCBI-ProteinID:
XP_052426592
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All DBs
Position
B12:10487752..10778204
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AA seq
931 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKNLGTGNKKLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQISYKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKARKGETVSSAALPEIEKQIAVSCLQAVIKYLELLSDEANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSSDDVTGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQAVGQLPSLVLA
LERYSGKHQVLLHAAFISPLNDLVSDFSKYQEMIETTLDMNQVEHHEFLVKPSFDPTLSE
LRENMDRLEKAMQAALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYVRPKILEKGSGSLIVKAARHPCVEAQDDVAFIPNDVTFRRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISSAGEEAGPEAKKRCLEKHEGERIIEAFLAKVKSMPVEGMSDE
AIKEELRKLKAEVIGQNNSFVNEIVTRSAKV
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtccatggacagtgcgtctgaacatggatttctg
aatttttatttttccatgcccgagaaaccggacaccaccgtgagagtatttgatcgaaac
gattactacacggtgcacggaaaagatgcggtttttgcagccaaggaggttttcaagacg
aatggagtcatcaaaaacctgggcacaggcaataagaagttggagagtgtggtcctcagt
aagatgaactttgagtcttttgtgagggacctgttgctggtcaggcagtatcgggtggag
gtttacaaaaatgccagtaagagcagcaaagaacatgactggcagatatcttacaaggcg
tctccaggaaacctgacccagtttgaggagattttatttggcagtggaggaggtcctggg
gagggagctgccggtgttgtcggggttcgtcttggcaccggggctgatggacagcgtgtc
gtcggtgttggctatgtggacagcaccctcaggaaactcggtgtgtgtgaattcccagac
aacgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
ctccctggaggagatgcaggcggagaccttgggaaactcaaacaggtggtgcagcgtggt
ggcattctgctcacagacaggaagaaatcagagttcacaactaaagacattgtgcaggat
ctgaataggcttctgaaggcccggaagggagagactgtgtccagtgctgcacttccagag
attgagaaacagattgcagtgtcttgcttacaagccgtcatcaaatacctggagcttctc
tcagacgaggccaattttggttccttcaagataaccacctttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaagctctgaatctcttccaggggtcttctgatgatgtt
acaggcactcattctctggcaggccttttgaacaaatgtcgtactcctcaaggacagcgg
ttggtcaaccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagacta
gatcttgtggagacttttgtggaagactctgagctgaggaagagttgtcaagaggatctt
ctccgccgttttccagacctgaaccgaatggcaaagaagttccagcgtcagagctccaat
ttacaagactgttaccgagtctatcaggctgtggggcaactgcccagtctggtgctggcc
ttggagagatacagtgggaaacatcaggttctcctgcacgcagcattcatctctcccctc
aacgaccttgtctctgacttctccaaatatcaggagatgattgagaccacactagacatg
aaccaggttgaacatcatgagttcctggtgaaaccttcatttgatcccaccttgagtgag
ctcagggagaacatggatcgcttggagaaagccatgcaggcggccttgaacagtgcggct
cgtgaacttggtctggaagcagctaagactgtgaagctcgagtccaacgcacagattggg
tactttttccgagtcacatgcaaagaagagaagagtcttcgcaacaacaagaaattcact
actctagatgttcaaaagaatggagtgcgattcactaacagtaagctgagctctttgaat
gaagagtacactaaaagcagagaagagtatgaagaagctcaaaacgccattgtcaaagag
atcatcagcatcgctgcaggctatgtggatccagtacagactctgaacgaggtgatcgct
cagcttgatgcagttgtgagttttgctgtggtgtcccatgctgctccagtgccttacgta
aggcctaaaatactagagaaagggtcagggagtctcattgtaaaggcggcaagacacccc
tgtgttgaagcccaagatgatgtggctttcattcccaatgatgtcaccttcagaaggggc
gaggagatgtttcatattatcacaggtccaaatatgggtggtaaatctacatacattcgt
caagtgggtgtgatcgtgttgatggcacagattggctgttttgtaccatgtgatgaggca
gagttgagtgtggtggactgcgtgctcgctcgagtgggtgcaggggacagccagatcaaa
ggagtgtccacctttatggctgagatgctggagacggctgctattcttcgatcagccaca
gaggattctcttatcattattgatgaattgggcagaggcacatccacatacgatggcttt
ggtctggcctgggcaatttcagaatacattgctacccgtctcaagtccttctgcttgttt
gccactcacttccatgaactgactgcacttgcacagcaggttcccactgtccgtaacctc
cacgtcactgccctgaccacagacagcactctaacaatgctctacaaggtgaaaaagggc
gtttgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcacgggagaaggctttggagcttgaggagttccaagatatctccagtgct
ggggaggaagctggacctgaagccaagaaacgctgcctggagaaacatgagggggagagg
atcatcgaggctttcctggctaaggttaaatcaatgcctgttgaaggcatgtctgatgag
gctatcaaagaggagctgcgcaagctcaaggcagaggtcatcggacaaaacaatagcttc
gtcaatgagatagtgacacgttctgccaaagtctaa
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