Carassius gibelio (silver crucian carp): 127969181
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Entry
127969181 CDS
T08819
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127969181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127969181
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127969181
Spliceosome [BR:
cgib03041
]
Complex C
Other components
Step II factors
127969181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
T2SSE
AAA_16
TsaE
PhoH
Sigma54_activ_2
ABC_tran
Flavi_DEAD
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
127969181
NCBI-ProteinID:
XP_052426923
LinkDB
All DBs
Position
B12:9368369..9377070
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AA seq
1200 aa
AA seq
DB search
MAEIGEDELKKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNPSIDGFKTVLVKN
GADFTDSLVSNLLRLIQTMRPPAKASTSKASHAVAKPNNEKDKLKELFPALCRADNPKTR
TMLDEEDVKVAADAMKELEMFMPSVSGTEPSSSKHRSETSSSSKKKRRSRSRSRSRDRDR
DRRRRHRSRSRSRSRSNERDRRKRRSRWHSRSRSRSPARGDRDKGSDRWKDKHVDRPPPE
EPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVTKGQRVK
VKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNMGGEGLEETAMRNPDRPTNLNLGHAPE
VEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIE
LVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAEMDS
IPTGLNKHWVDPLPDTDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSILE
QRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRR
VAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLGQYA
IIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGR
TYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSL
GPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFV
KQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEI
QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM
AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEG
DHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKAT
VRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE
YMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcagagatcggggaagacgagctcaaaaagcttgaatatttgtctttggtgtctaaa
gtttgtaccgaacttgacaaccatttaggaatcaacgataaggatcttgctgagtttgtt
atcagtcttgctgagaaaaacccaagcattgatggatttaaaacagtgctggttaaaaat
ggagccgatttcacagattcactcgtcagcaatttgcttcgtctcattcaaaccatgcgt
cctcctgcaaaagcatctaccagtaaagcctctcatgctgtggctaaaccaaataatgaa
aaggacaagctgaaagagctgtttccagctctgtgcagagctgacaatcctaaaactagg
actatgctggatgaggaagatgtgaaagttgctgctgatgccatgaaagagttggagatg
tttatgcccagtgttagtggtacagaacctagcagcagtaaacacagatctgaaactagc
agcagcagtaagaagaagcggaggagcagaagtcgcagtcgaagcagagacagggaccga
gacagacggagacgccatcgctcacgctcccgttccagatctcgctctaatgagagagac
cgaaggaagcgcaggagccgctggcactctcgcagcaggtccaggagtcctgcacgggga
gaccgagacaaaggctcagaccgctggaaggacaaacatgtggaccgcccccctccagag
gagccatctgtgggcgatatctacaacggcaaagtcaccagtattatgcagtttggctgc
tttgtgcagttggaaggtctccggaaacgctgggaaggcttggtccatatttctgagctc
aggagagaaggtcgggtagcaaatgtggctgatgtggtcactaaaggtcaaagggtcaaa
gtcaaggtgttgtccttcactggatctaaaacaagtctcagtatgaaggacgttgaccag
gatactggtgaagatctgaaccctaacaggaggagaaatatgggtggagaaggtctggaa
gagacggccatgaggaatcctgacagacctacaaacctgaacctgggccatgctccagag
gtagaggatgacacattggaacgcaaaagactcaccaagatctccgatccggagaagtgg
gaaatcaaacagatgattgctgccaatgtgctgtctaaggaggaattcccagactttgat
gaagagacaggaattttgcctaaagtagatgatgaggaagatgaggacttggagattgag
ctggtggaagaggaacctccattcctgaggggacacaccaaacagagcatggacatgagt
cctgtcaagattgtcaagaaccccgatggatctctctcccaagcagccatgatgcagagt
gccctggccaaagagcgaagggaggtgaaacaggcccaacgggaggctgaaatggactcg
atccccacgggcctaaacaaacactgggtggacccactgcctgacaccgacggcaggcag
atagctgctaatatgaggggcataggtatgatgcccaatgacatcccagaatggaagaaa
cacgcttttggtggcaacaaggcctcctatggaaaaaagactcaactttctatcctagag
caaagagagagtcttcccatctacaagttgaaagagcagctcgttcaggctgtccatgac
aaccagatcctaattgttattggtgagacaggctcaggaaagaccactcagatcactcag
tacctggctgaggctggatacaccacacgggggaagatcgggtgcacacaacccagaaga
gtggcagccatgtctgtggctaaaagagtgtcagaggaatacggttgctgtttaggtcaa
gaggttggctacaccatccgttttgaggactgcacaagtcccgagactgtcattaagtac
atgacggatggtatgttgttaagagagtgtctgattgaccctgatctgggccagtatgcc
atcattatgttggatgaggcccacgagagaaccattcacacagatgtgctctttggcctg
ctcaagaagactgtacagaagcgaactgacatgaagctcatcgtgacatctgctacgctg
gacgctgtgaaattctcgcagtacttttatgaagcacccatttttactatccctggtcgt
acatatccagtggaggttttgtacactaaagaacctgagactgattatttggatgccagt
ctgatcacagtcatgcagattcatctcactgagcctccaggtgacatcttggtgttcctg
acgggtcaggaggagatcgacactgcctgtgagatcctgtacgaacgaatgaaatccctt
ggtcctgatgtcccagagctgatcatcctcccagtctactctgccctgcccagtgaaatg
cagaccaggatctttgacccagcaccacctggaagtcgaaaggtggttattgctactaac
attgcagagacttctttgacaattgatgggatctactatgtggtggatccaggttttgtc
aagcagaaggtttataactccaaaactggcattgatcagctagtagttacccccatttcc
caggcccaggctaagcagcgagcgggccgagcaggaagaacaggccctgggaagtgctac
agactctacacagaacgtgcctacagagatgagatgctcaccaccaacgtacctgagatt
cagagaactaacttggccagtactgtactgtctctaaaggcaatgggcatcaatgacctg
ttgtcatttgatttcatggatgctccgcccatggagacgctcatcacagccatggagcag
ctgtacactctgggagcattggatgatgaaggcttgcttacacgcctcggtcgtagaatg
gccgagtttcctctggagcctatgctttgtaagatgttgatcatgtccgtccatcttggc
tgcagcgaagagatgctgaccattgtgtcaatgctttcagtacagaatgtcttctacaga
ccaaaggacaaacaagctctggcagatcagaagaaggccaagtttcaccagcccgagggg
gaccatctgaccttgttggctgtctacaactcctggaagaacaacaagttttccaacccc
tggtgctacgaaaatttcatccaggcacgatctctcaggcgtgcgcaggatatccgcaaa
cagatgctgggcatcatggacagacacaagttggatgtggtatcatgtggtaaagccaca
gtacgtgtacagaaggccatctgcagtggtttcttccgaaacgccgccaaaaaggaccct
caagaaggttacagaacccttatagaccagcaggtggtctacatccacccctccagcgca
ttgttcaatcgccaaccagaatgggtggtgtatcatgagcttgtgctgaccaccaaggag
tacatgagggaggtgaccaccattgacccgaggtggcttgtagaattttctcctgctttc
ttcaaagtctctgatcccacacgcctcagcaaacagaagaaacagcagcggttggagccc
ctttacaaccgctacgaggaaccaaatgcgtggagaatatccagagccttcagacgacgc
tag
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