Carassius gibelio (silver crucian carp): 127969982
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Entry
127969982 CDS
T08819
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127969982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127969982
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127969982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
127969982
NCBI-ProteinID:
XP_052428100
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All DBs
Position
B13:complement(3541575..3553586)
Genome browser
AA seq
1368 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKARSNPSPVEADAVNRSNTSPKEQAKVNSKKTPSKPIKPQT
TAGHAKLFGEKAVSAKQSSEPSSIFNAGTLVWAKLEGHPWWPCMIVPQPLTGQQMRGRGR
DQRLHVHFFDEPPTRGWVNTKYIREYQGSDSTDAKSGGVFFSGKPVIRKAMELADAAMKD
SPEQRLKMSVCMDPSGDEEEEEEDMEVDKSTLSDADMSEEEVKEKAKPSRRSSRAAAEKG
QKPKRRRIVVASDSDDSGEEFKPDQAGGSSDEEEEEGVSSGAEEEESEPETEPDSPVKPV
KRKRPSENPVKSKSKPDPPKRAPAAVSSVASDTKSRLSAFSAPDNFESQSGNANGTDGGP
TLWDHEKLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFD
TVLFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVAR
VEQTETPEMMEARCKTLARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSI
KEKSEEDSAGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVLYEKGNP
SAEMLKIFKAILSSTLQEGLNAGSQFWDAQKTLKVLAEEDYFNESKTDEEKASVLPSTLK
AMTSECDALSLTPKAGYELALSAFGGCMFYLKKCLVDKELLSMGNFEEYVPVDVEMEQAG
GASCFFAQTRQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDMCCTPFGKRLLKQWLCA
PLCNPSSIGDRLDAVEDLMGAPSQVSEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDS
RAILYEEVIYSKRKIADFLAALEGFKVMKEIVSIMEPVSDGFKSKLLRQVMLLKTENEDG
LFPDLSPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKDCDRGLQEYLDRQKK
RLGCKNLSYWGTGRNRFQLEVPDSVSERSLPEEYEVRSTKKGWKRYWTKEIERLFSELQS
WEDKRDSALKDCMRRLFYNFDKNCKDWQTAVECMAVLDVLLSMSRYSQSGDGPMARPEIL
LPGDGSQSRPFLDLRGSRHPCVTKTFFGDDFIPNDIFIACPGAEDDDEEDDKALAPCVLV
TGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFV
ELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSL
VEEHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEEV
IQSGHKKAREFERSTVSLRIFKKLCSFAEDPSSDRERFTTLLQMISGL
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagagttctctttttaatttcttcacgaagtcgcctcctctcgcggtgaag
gccagatctaacccttctccagtggaggctgatgcggtgaacagatccaacacctccccc
aaagaacaagccaaagtaaacagcaagaagacgccatcaaaacccatcaaaccccaaact
acagctggacatgcgaaactattcggagagaaagcagtcagtgcgaaacagagcagtgaa
ccgtcatctatattcaatgctggcactctggtttgggccaaactggagggccatccctgg
tggccctgtatgattgttcctcagcctctcactggacagcagatgaggggccgaggacga
gaccaaagactccacgttcacttcttcgatgaaccgccaacccgaggttgggttaacaca
aaatacataagagagtatcaaggctctgatagcaccgatgccaaatccggcggcgtgttc
ttcagcggtaagcctgtgatccgtaaagcgatggagctggcagatgctgcgatgaaggac
agtcctgagcagagactgaagatgtccgtgtgcatggatccttcaggtgacgaagaggag
gaggaggaggatatggaggttgataaatcaaccttatcagatgcagatatgtctgaggaa
gaggttaaagaaaaagcgaagcccagtcgacgttcgtctcgtgctgcagctgaaaaaggt
caaaagccgaagcgtcgccgaatcgtggtggcgtctgacagcgatgactctggtgaagag
ttcaaacctgatcaggcaggaggaagcagtgatgaagaggaagaagagggagtgagtagc
ggggctgaggaagaagaaagcgagccggagacagaaccagacagccctgtgaaaccagtt
aagcgcaaacgtccatcagaaaatcctgttaagtcaaagagcaaaccagaccccccaaaa
cgagcacctgcagccgtttcatcagtggcatcggacaccaaatctcgactttctgctttc
tccgcaccggacaacttcgaaagtcaaagcggcaacgcaaacgggacggatggaggacca
actttgtgggaccacgagaagctggagtggctgcaagacggcaagagaaaagatgcacaa
cgcaaacgtcagtctgacgaaaactacgaccccacgactctatacgtccccgaagatttc
cttaacaggacgacacctggcatgcgccgttggtggcagctgaagtccgagatgttcgat
accgttctgttctacaaagtcggtaagttctacgagctctaccacatggacgctgtgatc
ggcgtcaatgagctcggtcttaccttcatgaagggcacttgggcacattccggcttcccc
gagatcggctttggacgcttctcagacgttctcgtgcaaaagggctacaaagtggctcgc
gtggaacagaccgagacccctgagatgatggaagcacgatgtaagacattggcgcgtccc
actaaattcgaccgcgttgtcaagcgagaggtttgccgaatcatcacgcgagggactcag
acgtacagcgtgctcgacggcgccccttcggaaactcaaagcaagtatctcttgagcatt
aaagagaagagcgaggaggacagcgcgggacacggacacatctatggggtgtgtttcatc
gacacctcggtgggacgcttccatatcggtcaattccaggatgaccgtcattgttcccgt
ttgcgtactctggtggcgcactattctccagcccaggtgctttacgagaagggcaacccg
tcagctgagatgcttaaaatctttaaagcaatcttgtcttcaactctacaagaaggtctc
aatgctggttcgcagttttgggatgcgcagaagaccctcaaggtcctcgcagaggaagac
tacttcaacgaaagcaaaaccgatgaagaaaaggcatcagtgttgccttcgactctaaaa
gcaatgacgtctgaatgcgatgctttaagtctcactccaaaagcggggtatgaacttgct
ctttctgcatttggcggatgcatgttctacctgaagaaatgtctagtggataaggagctt
ttatcaatgggaaactttgaggagtatgttcctgtcgacgtggagatggagcaggctgga
ggagcgtcgtgtttctttgcccagactcgtcaacgaatggttttggatggagtgaccctt
gctaaccttgagatccttcagaacagctcaactggaggtcctgagggaaccctacttgag
cgactggacatgtgttgcactccctttggcaaacgcttgctaaagcaatggctttgcgca
cctctttgcaatccatcctccattggagatcgcctagatgctgttgaggacctgatgggc
gccccgtctcaagtctccgaagtcactgacctgctaaaaaagcttcctgatctcgaaaga
ctgcttagcaagatccacagcatgggtactcctttgaaaggacaggaccatccggattcc
cgagctattttgtacgaagaagtcatctacagcaaacgcaagatcgccgactttctcgcc
gcacttgagggctttaaagttatgaaggaaatcgtgtcgatcatggagcccgtttcggac
ggctttaaatccaaactgctgcgtcaagtgatgctcctcaagactgaaaacgaagatggg
cttttcccagacctttccccagagctcaaacgctgggatacagctttcgaccatcagaaa
gctcgcaccacaggcgtcatcacgccaaaggccggcttcgatccagagtacgaccaggcc
ttaaacggaataaaagactgtgaccgaggcctgcaggaatacctggaccgacagaagaag
cgactgggctgtaagaatctgtcttattggggaacgggaaggaaccgcttccagctcgaa
gttccagacagtgtttccgagagaagcttgccagaagagtacgaggtgaggtccaccaag
aaaggctggaaacggtactggactaaagagattgaacggctgttttcagagctacagagc
tgggaagacaaacgagactcggcgctgaaagactgcatgagaagactcttctacaatttc
gataagaactgcaaagactggcagacagcggttgaatgcatggcagtgcttgacgtgctg
ttgagcatgtcccgttacagtcagagcggcgacgggcccatggcgagaccagagatcctt
ctcccaggtgatgggtctcagtcacgccccttcctggatctcagagggtcccgtcaccct
tgcgtcaccaagaccttctttggtgacgacttcatccccaatgacatcttcatcgcctgc
cctggtgctgaggatgatgatgaggaggatgataaagcacttgccccatgtgtattggtc
actgggccaaacatgggaggcaagtccaccctgatgagacagtgtggtctggtggtgatt
ttggctcagctgggctgctatgttcctgctgagagtctgcggctcactcctgtggaccgc
gtcttcactcgactcggcgcctctgatcgtataatgtcaggtgaaagcacgttctttgtg
gagctgagcgagacggccagcatcctgctgcacgccaccaaccactccctcgtcctgctg
gatgaactgggccgaggcacagccacgtatgacggcacagccattgccagcgctgttgtg
aaggagctgtcagagaagatctgctgccggaccctgttctccactcattaccactcgctg
gtggaggagcacgtccaggaccccgccgtcagactcggacacatggcctgtatggtggag
aacgagtgtgaggaccccagtcaggagaccatcaccttcctgtacaagttcatcagaggc
gcgtgtcccaagagttacggcttcaacgcggctcgcctggcgaacatcccggaggaagtc
atccagtccggccataagaaggcccgcgagtttgagaggagcaccgtgtctctccgcata
ttcaagaagttgtgctcgttcgctgaagaccccagctccgaccgcgagcggttcacaaca
ctgcttcagatgatcagcggcctgtga
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integrated database retrieval system
