Carassius gibelio (silver crucian carp): 127970205
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Entry
127970205 CDS
T08819
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127970205
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
127970205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
HEAT_EZ
ARM_ECM29
Arm
Motif
Other DBs
NCBI-GeneID:
127970205
NCBI-ProteinID:
XP_052428477
LinkDB
All DBs
Position
B13:6068743..6090652
Genome browser
AA seq
1861 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVRNIPEWNPPPKPKDEVCAEDMSPDEISSDRLSFYRFDISRLLKHGASLLG
SAGAEFELQDDKSGETDPKERLARQRKQLQKKLGLDMGAAIGMDTEELFNDEDLEDACAS
STNRSQPGKSLGCHFSRNHLPAAELIDSEFRPGMSNRQKNKAKRMAKLVAKQKSRDVDPN
EKSNDSFEGEPEEKRRKTTNVVIEQPATDSKVLIDNVPDNSSLFEETQEWPLESFCDELC
NDLFNPSWEIRHGAGTGLREVLKCHGTGGGKTVGSTAEQMERQHQEWLEDLVIRLLCVFA
LDRFGDFVSDEVVAPVRETCAQTLGVALRHMANSGFAMTVDILLKLLTEDQWEVRHGGLL
GIKYALAVRQDLIAELLPRVLPAITEGLRDLDDDVRAVAAAALIPVVDGLVQLQPAKVPF
IVDTLWNALLELDDLTASTNSIMTLLSSLLIYPQVRQCSTHQSLTVLVPRVWPFLRHTIA
SVRRAALETLFTLLSKADQSCALWLNPIMQDMLRHIFQSCMLESNQEILELIQKVWGELL
RQAPHQYVVAASCPWMGAWLCLMMQASHIPIDPNMLLEVKARLKEKASGKTRQGSVPVKE
TVQEYIGGAETIGEDPATRDYVVTRARLMAAKLLGALCSCICDPQLNSSSQELRPAESLA
QLLLFHLNSKSALQRIAVSMVICEWAGLQKECELLSSVVQPRLLVILSEQLYYDEIAIPF
TRMQNECKQLIALLADANIDVSERINSTVFTIDQANELVTTIFSECTSSLNLQSHQFQLL
DSKRLQARSTVCETSADWQQLQLRVHTFAACAVVGLAMLPDKLNPVVRPLMEAARREENT
LVQGYAASNIARLLQLCAARSPCPNAKILKNLCSSVCVDPMLTPSAACPVPPASTPAIQE
SSKASVAERDAMHHMVNKSKGIITLYRHQKAAFAITSKRGPTPKAPKTTNNDLPLGGSIT
TETDEGKKPCLIQRRGAEFCLMTVARHFGKELTKTLPYLWDSMTGPLRNALDAQGFDSSQ
LLKQGDPVAQELVNSLQVLEVTAGAMSQELIPLLMEQLPLLCTCLQHPYTAVRHMAARCV
GVLSKIATMETMNVFLEHVLPWLGAIDDNTKQEGAIEALACVMEQLDVDIVPYIVLLVVP
VLGRMSDHCDSVRFMATQCFATLIRLLPLEAGIPDPPSMSEDLIQQKARERHFLEQLLDG
TKLENYKIPVPIKADLRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHF
LRAQEYARSKAPDCCPLPSIVVCPPTLTGHWVDELGKFCSKEYLNPLHYTGPPTERAWLQ
HQVKKHNLVVASYDVVRNDIDFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRII
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQIQLYEDFAKSRAKVNVEDVIST
ASVQEEEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKHITEQLSRQHSSLRDI
QHAPKLSALKQLLLDCGLGSAGAADGGTEAVVAQHRVLIFCQLKSMLDIVEQDLLKTQLP
TVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MKDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENTSLQSMG
TEQLLNLFTLDKDNKAEKSEAAASSSGKTGMKSVLDGLGDLWDQQQYENEYDLDSFMHSL
K
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttcaaggttggaacgactgtttattttgctggatacgggtacgactcctgtt
acccgtaaagcagctgctcagcagttgggagatgttgttaagcttcatccacacgagctt
aataacttgctatcaaaggttttaacatacttaagaagtccaaattgggatacacgaatc
gcagcgggacaagctgtcgaagccatagtgaggaatattccagaatggaacccacctcca
aagccaaaagatgaggtgtgtgctgaagatatgtctccagatgaaatctcctcagaccgg
ctgagtttctacaggtttgatatctcccgtctgctcaagcatggagcatcgctgctcggc
tctgcaggtgctgaatttgagctgcaagatgacaagtcaggtgagacagatcccaaagag
cgtttggcccggcagaggaaacagttacagaagaagctgggattggatatgggtgcagcg
atcggcatggacacagaggagctttttaatgatgaggacctggaggatgcctgtgcttcc
agtaccaacagatcacagcctgggaaaagcctgggctgtcacttctcacgcaaccatttg
ccggctgcagagctcatagattcagagtttcgtccaggcatgagcaatcgacagaagaat
aaagccaagaggatggcaaaacttgtggcaaagcagaaatccagagatgtggatcctaat
gagaagagcaatgacagttttgagggagagccagaggagaagcgccggaaaactacaaat
gtagtcattgagcagccagcaaccgacagcaaagtcttaattgataatgttcctgataac
tccagtttatttgaggagactcaggaatggccccttgaaagcttctgtgacgaactgtgc
aatgacctgttcaacccctcgtgggagattcgtcacggtgccggcacgggactgagggaa
gtgctgaagtgtcatggtactggtggaggaaagactgttggcagtacagcagaacagatg
gagcgacagcaccaggagtggttggaggatttggtcatccggcttttgtgcgtctttgct
cttgacagatttggagactttgtgtcagatgaggtggtagcacctgtcagagagacgtgt
gcccagactctgggtgtggccttgaggcacatggcaaacagtggctttgcaatgactgtg
gacattctgctcaagctgctaactgaagaccagtgggaggttcgtcacggaggcctgctc
ggcatcaaatacgctcttgctgtcagacaggatttgatcgctgagctgctgccccgggtt
cttcctgccattacagaaggcctgcgggacctggatgatgatgttcgtgcagtggcagca
gcagctttgatcccagtggtggatggattggttcagttgcagcctgctaaggttcccttc
attgtggacacactgtggaatgccctgctggagctggatgatctcacagcttcgactaac
agcatcatgaccctcctgtcctccttgctcatttacccacaggtccgccagtgcagcacg
caccagtctctcacggtgttggttcctcgagtatggccattcctgagacacacaatcgct
tctgttcgtcgggctgccctagagaccctcttcacattgctttccaaagcagaccagagt
tgtgcattgtggctgaatcccatcatgcaggacatgttaagacacatctttcagtcctgc
atgctggagagcaaccaggagatcctagagttgatacaaaaggtgtggggggagttattg
cgacaggccccgcaccagtatgtggtggcagccagctgtccttggatgggtgcatggctc
tgtttgatgatgcaagcgtcacacatcccaattgaccccaatatgctgctggaagttaaa
gcacgcttaaaggagaaggcttctggaaagaccagacaaggatctgttccagtcaaggaa
acggtccaggagtacatcggtggagcggagacgattggcgaagaccctgccacgcgagac
tatgtggtgacacgtgcacgtctaatggctgcaaagctgttgggggcgctgtgcagttgt
atttgtgacccacagttgaatagctcttctcaggaactccggcctgcggaatctctagca
cagcttttactcttccatctcaattccaaatcagcccttcagcggattgcggtttccatg
gtgatctgtgagtgggcaggccttcagaaggagtgcgagctgctgtccagtgtggtccag
cccagattactggtcattctctcagagcaactctactatgatgagatcgccatacctttt
actcgcatgcagaacgaatgtaaacagctcatagcactgctggctgatgccaacattgat
gtgagcgaacgaatcaactccactgtattcaccatcgatcaggctaatgagctggtgacc
accatcttctcagaatgcacctcctctctgaacctccaatcacatcagttccagctgctg
gacagcaagaggttgcaggctcgttccactgtgtgcgagaccagcgccgactggcagcag
ctgcagctgagagttcatactttcgctgcctgcgctgtagttggacttgccatgctgccg
gataaactcaatcctgttgtcaggcccctgatggaggcggcccgccgcgaagagaacacg
ctcgtccagggttatgcagcctccaacattgctcgcctgctgcagctgtgcgctgccaga
tctccctgcccgaatgccaagatcttgaagaatctctgcagctcggtttgtgtagatcca
atgctcacccctagtgctgcatgtcctgtcccaccagccagcactccagcaatacaagag
agcagtaaagcatctgtggcagagagggatgcgatgcatcacatggtgaacaagtcaaag
ggcatcatcaccctttaccggcatcagaaagcagcttttgccatcaccagcaaaagaggt
cccacaccaaaagcccccaaaactaccaacaatgacctgcccctcggaggcagcattacc
acagaaacagatgagggtaagaagccatgtcttatccagaggagaggagcagagttctgc
ttgatgacagttgccaggcatttcggtaaggagttgaccaaaactttgccatatctgtgg
gactccatgactggtccgctgaggaatgcgctggatgctcagggatttgattccagtcag
ctgctgaagcagggagacccggttgctcaggagcttgtgaactctctgcaggtgctagag
gtcacagcaggagccatgtcccaagagctcatccctttattgatggagcagttgcctctc
ctgtgcacctgtctgcaacatccatacacagctgtacgtcacatggccgcgcgctgtgtg
ggcgtgctcagcaagatcgctactatggagaccatgaatgtgttcctggaacatgtgctt
ccctggttgggtgctattgatgacaacaccaagcaggagggggccatcgaagccctggcc
tgtgtgatggagcagttggatgtggatattgtgccctacattgtgttgttggtggtccct
gtgttgggccgtatgagtgaccactgtgacagcgtgcgattcatggccacacagtgcttt
gcaaccctgatccgactgcttcctcttgaggctggaatcccagacccaccgtctatgtct
gaagatttaattcaacagaaggccagagaacgacacttcctcgagcagctgcttgatgga
acgaaactggaaaattataagattcctgtgcccatcaaagcagacctcaggaaataccaa
caggatggagtgaattggctggcatttttgaacaagtacaagcttcatgggatcttgtgt
gatgacatgggtctgggtaagaccctacagtccatctgtattctggcaggcgatcatttc
ctcagggctcaggagtatgccaggtcaaaggctcccgactgttgccctttgccttccata
gttgtgtgtccgcccaccctgacgggacactgggtggatgagcttgggaagttctgctct
aaagagtatctcaatcctctgcactatactggcccccctacggaaagagcatggttgcag
caccaggtgaagaaacacaatctcgttgttgcctcgtatgacgtcgttagaaatgacatt
gactttttcagggatattaaatttaattactgtatccttgatgagggtcacgtcataaag
aatggaaagaccaaactttctaaagcgatcaagcagttaactgccaactacagaataatc
ctctcaggaacccccatccagaacaatgttcttgagttgtggtctctctttgacttcctg
atgccagggtttcttggcactgagcgtcagtttgctgcccgctacgggaagcccatcctc
gccagtcgagatgcaaaaagttcctcacgcgaacaggaagcgggtgtgttggcaatggaa
gctttgcataggcaggttctgcccttcttactgaggagaatgaaggatgatgtgcttcaa
gatctgccacccaagatcatacaagattactactgcaacctcagtcctctacagattcaa
ctatatgaggactttgcaaagtctcgtgcaaaggtgaacgtggaggacgttatttccact
gcgtctgtgcaagaggaggaagagaaacccaaattaaaggccaccggacacgtcttccag
gctctgcagtatctgaggaagctgtgtaatcacccagcgctggtgctgacccctcaacac
ccagagtacaaacacatcacagaacagctgagcagacagcactccagcctcagagacatt
cagcacgccccaaaactctcagccctcaaacagctgctgttggactgtggactgggttct
gccggagcagctgatgggggcacagaggctgttgtggcccagcaccgtgttctgatcttc
tgccagctgaagagcatgctggacatcgtggagcaggatctgctcaaaacacagctgccc
acagtcacctacctcaggctggatggaagcgttcaggctggcctcagacactccatagtc
tctaggttcaataatgatccgtccatagatgttctgctgctcactacccatgtgggtggg
ctgggtttgaatctgactggagcagataccgtggtgtttgtggagcatgactggaaccct
atgaaagacttgcaggccatggatcgagctcacagaataggacagaaacgtgtggtgaat
gtgtatcgtctcatcacacggggcacgctggaggagaagattatgggtctgcagaaattt
aagatgaccattgcaaatacagtcatcagccaagagaacaccagcctgcagagcatgggc
acagaacagctgctcaacctcttcacactggacaaggataataaagcagagaagagtgaa
gcggcagcatcgtcctctggtaagaccggtatgaaatctgttctggatgggctgggcgac
ctgtgggatcagcagcagtacgagaacgaatacgacctggacagcttcatgcactcactt
aaatga
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