Carassius gibelio (silver crucian carp): 127970339
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Entry
127970339 CDS
T08819
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04145
Phagosome
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127970339
04518 Integrin signaling
127970339
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127970339
09144 Cellular community - eukaryotes
04510 Focal adhesion
127970339
09142 Cell motility
04820 Cytoskeleton in muscle cells
127970339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgib04131
]
127970339
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
127970339
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
127970339
Membrane trafficking [BR:
cgib04131
]
Endocytosis
Phagocytosis
Opsonins
127970339
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127970339
Exosomal proteins of colorectal cancer cells
127970339
Exosomal proteins of bladder cancer cells
127970339
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127970339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
TSP1_CFP_C
TSP1_ADAMTS
cEGF
Laminin_G_2
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
127970339
NCBI-ProteinID:
XP_052428810
LinkDB
All DBs
Position
B13:complement(8981466..9003367)
Genome browser
AA seq
1175 aa
AA seq
DB search
MILRRNFYLLPLLLLCIRALPQDGHVEDESVFDLFKISSISRKTIGAKLFKGHDWDSPAY
RFIRFDHVPAVSTPALHQILKQVQNNEGFVFVASIRQDKGSRGTLIGLEGPSGSRQFEIV
SNGRANTLDLLYMVKGSQNVVSFEDVDLSDSQWKNITLYIHGENAHLYVGCSLIDSVILD
EPFYEHLRPEGSQMFVAKGSIRENHFRGLLQNVQFIFDTPIEDILRNKGCVIAKPEEVNV
VNESTETVSVGTAISTNFIGQKEKMASDVCERSCEEITNMVQELKGLRIVVGNLIDGLQK
VTEENTVMKEVLGNMKNIKDKRMCWQDGRLFEDKEDWVVDSCTKCTCQESKIVCHQITCP
PVSCASPTFLDGECCPVCLPKDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATSNPCSG
PSIQTRRCNLGKCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNSPVPQLGGKDCE
GSGRETKKCEAKPCPIDGAWGPWSPWAICSATCGGGTRTRTHVCNSPHPQYGGKKCPGES
KDTDSCNKQDCPVDGCLSNPCFGGVDCTGSADGSWECGPCPVGFRGNGTFCEDVNECDMV
PDLCFKSGESQRCVNTDPGFHCLPCPPRYKGNQPFGMGVEAAKLNKQVCEQENPCKEKTH
NCHRSAECIYLGHFTDPMFKCECKIGYAGDGLICGEDSDLDGWPNQNLVCGANQSYHCKK
DNCPNLPNSGQEDFDKDGQGDACDKDDDNDGIMDEADNCPLLYNPRQFDYDKDLVGDRCD
NCPYEHNPAQIDTDGNGEGDACSVDIDGDGVLNEHDNCPYMYNTDQKDTDMDGVGDQCDN
CPLLHNPEQTDSDNDRVGDECDNNQDIDEDGHQNSLDNCPYIPNANQADHDKDGKGDACD
FDDDNDGIPDDKDNCRLVPNKDQLDSDGDGRGDVCRDDFDNDNIPDILDVCPENDAIGNT
DFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTANSDPGIAVGFDEFNAVDFSGTFYVN
TDRDDDYAGFVFGYQSSSRFYVVMWKQITQTYWEVNPSKAFGIAGVSLKVVNSTTGTGEH
MRNALWHTGDTPGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMADS
GPVYDKTFAGGRLGLFVFSQELVYFSDLKYECRDN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgatactcaggagaaatttctacttgctgcctttgctgttactatgcatcagagcacta
cctcaagatgggcatgtggaagatgaatccgtcttcgaccttttcaaaatcagcagcatc
agcagaaagacgatcggtgccaagctcttcaagggccacgactgggactcgcctgcatat
cgctttatacgctttgatcacgtccctgctgtaagcaccccggccctccatcagatccta
aagcaggtccagaacaatgagggctttgtgtttgtggcctccatacgacaggacaagggc
tccaggggaaccctgattggtctggagggccccagtgggagccgtcagtttgagattgtg
tccaatgggcgagccaacacgttggatctcctttacatggtcaagggatctcagaatgtt
gtgtcgtttgaggatgtggacttgtctgattcgcagtggaagaacattacgctgtacatt
cacggagagaatgctcacctctatgtaggctgtagcctcattgacagcgtgatcctggat
gagcctttctatgaacatctgcggccggagggcagtcagatgtttgtggccaagggatct
atcagggaaaaccacttcaggggtttactacagaatgtacagttcatttttgacacacca
atagaggacatcctaagaaacaaaggttgtgtgatcgccaaacctgaggaagttaacgtg
gttaatgaaagtacagagactgtgtctgttggtacggccatctccaccaacttcattggg
cagaaggaaaaaatggcatcggatgtgtgcgagcgctcctgtgaggaaatcaccaacatg
gtccaggagctcaaaggtctccgtattgttgtgggcaatctcatcgatggcttgcaaaaa
gtgactgaggagaacactgtgatgaaggaggtgctggggaacatgaagaacatcaaagac
aagcgcatgtgctggcaagacggccgtctctttgaggataaggaggactgggttgtggac
agctgcaccaagtgtacctgtcaggaatcaaagattgtatgccatcagatcacatgtcct
ccagtatcctgtgccagccctactttcctagatggtgaatgctgtccagtgtgtctgcct
aaagacagcgaagatggctggtcgccttggtccgaatggacggagtgtaccgttacatgt
ggaacaggcacccagcaaagaggcaggtcatgtgatgccacaagtaacccctgcagtggc
ccctccattcaaacccgcagatgcaacttgggaaaatgcgacagtcgtgtccgtcaagat
ggtggttggagtttgtggtcaccctggtcgtcatgctctgtgacgtgtggagagggacag
atcacgcgaattcgccactgtaactcccctgttcctcagctgggaggaaaggactgtgag
ggcagtgggagagagactaaaaaatgtgaagctaaaccctgtccaattgatggagcctgg
ggcccatggtctccttgggcgatctgctccgccacctgtgggggaggaacaaggacacgg
acacatgtgtgtaacagccctcatccgcagtatggtggcaagaaatgcccaggggagtcc
aaggatactgattcctgcaacaagcaggactgtcctgttgatggttgtctatctaaccca
tgcttcgggggtgttgactgcactggctccgctgacggctcgtgggagtgcgggccctgc
cctgtcggtttccgtggcaatggaacattctgtgaggatgtgaatgagtgtgacatggtg
cctgatctttgttttaaaagtggtgaatcccagcgctgtgtcaacacagacccaggattc
cactgcttgccttgccctcctcgatacaaaggcaatcagccctttggaatgggagtggag
gctgccaagctaaataagcaggtatgcgagcaagaaaacccctgcaaagaaaagactcac
aactgccacaggtccgctgagtgtatctacctcggccacttcactgaccccatgtttaaa
tgtgagtgtaagatcggctatgctggggacggccttatctgcggcgaggactctgacctt
gatggctggcccaatcagaacctggtgtgtggagccaaccaatcctatcactgcaaaaag
gacaattgtcccaaccttccaaactcaggccaagaagacttcgataaagacggtcaagga
gacgcctgtgacaaagacgatgataatgatggaataatggatgaggcggacaactgtcct
ctgctgtacaatccgaggcaatttgactacgataaagatcttgtgggtgaccgttgtgat
aactgtccatatgagcacaaccccgctcagatcgacacagacggtaatggcgagggagat
gcctgctctgtagacattgatggagatggggttctgaatgagcatgataactgcccctat
atgtacaatactgaccagaaggacaccgatatggatggagtgggagaccagtgtgataac
tgtcctctgctgcacaaccctgaacagactgactccgataatgaccgagttggtgacgag
tgcgacaacaatcaggacattgatgaggacggccaccagaacagcctggataattgtccc
tacattcccaatgccaaccaggccgaccatgacaaagatgggaaaggagatgcttgtgat
tttgatgatgataatgacggaatccctgatgacaaggacaactgcagactggtgccaaac
aaagatcaactggactctgatggggatggaagaggcgatgtttgcagagatgattttgac
aatgacaacattccagacattttggatgtgtgccctgagaacgacgccatcggtaacact
gacttccggaagttccaaatggtgcatttggaccccaaaggaactacacaaattgatccc
aactgggtggtcagacatcagggcaaagagttggttcagacggccaattctgaccccggt
atcgcagtgggtttcgatgagttcaacgccgtggatttcagtggcactttctacgtcaac
actgacagagatgacgattacgctgggtttgtgtttggatatcagtccagcagtcgattt
tatgtggtaatgtggaagcagataactcagacgtactgggaagttaatccttcaaaagct
tttggcatcgctggtgtttctctgaaagtggtcaactctaccacgggcacaggggagcac
atgcggaacgccctctggcacaccggtgacactcctggacaggtccgcacactgtggcac
gaccctaagaatatcggctggaaggattacactgcgtacaggtggcatctcatccacaga
cccaagacaggattcatcagagttgtggtttatgaggggaaacagatcatggcagactcg
gggccggtttatgataaaacctttgcaggagggagattaggactgttcgtgttttcccaa
gaactggtttacttctctgatctcaagtacgagtgtcgagataactga
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integrated database retrieval system