Carassius gibelio (silver crucian carp): 127970554
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Entry
127970554 CDS
T08819
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127970554
04518 Integrin signaling
127970554
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127970554
09142 Cell motility
04820 Cytoskeleton in muscle cells
127970554
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
127970554
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Others
127970554
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127970554
NCBI-ProteinID:
XP_052429130
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Position
B13
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AA seq
681 aa
AA seq
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MAHAAGVRGPLLLILLEITIICTAQRAGAGPPGPPGVPGVDGIDGERGDPGEDGSAGPDG
DLGKPGSAGLPGLPGADGLTGPIGELGPDGLPGQKGEPGNPGPRGGVGVGPDGPIGPPGP
GGLPGEQGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCSDACPHGAPGHPGLPG
MKGHKGVKGEAGEPGKQGHKGEEGDQGASGEVGAQGPVGSQGIRGATGMIGSKGETGPRG
VDGDPGPQGVAGATGDRGQRGLMGETGPKGEQGPPGSRGNTGLPGSKGDSGLPGVDGREG
IPGMPGAKGAAGKPGSPGEVGLQGLPGLPGSPGPKGGGGEKGNAGQPGLIGTMGSVGKQG
ERGEQGEFGPIGPIGQPGDRGEQGPPGPLGKPGARGPKGDLGLPGLPGPPGLPGIKGDRG
EAGEPGPKGEQGAQGDEGSPGDKGDVGDPGQLGAKGEVGNQGDPGNRGPEGARGQPGIEG
PPGSAGPRGMQGNRGAPGPRGTQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESG
AVGLPGRPGPPGPPGPQGDSGFPGHAGARGLPGLKGPLGLLGVKGPKGEMGDRGDRGPTS
RGPKGMPGPPGLPGEPGKPGYGQDGRDGERGPPGTPGQPGVPGPPGSAGPPGYCDPSACN
LSAGAVHQSLKDSSMKGPGGN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggctcacgctgcaggagtgcgcgggccccttttactgattttgttggagataaccatc
atttgcacggcacagagggctggagccggccctcctggtcctcccggtgtgccaggagta
gacggtattgatggcgagagaggtgaccctggtgaagatggatcagctggtcctgatgga
gatcttggaaaaccaggttctgctggacttcctggactacctggagcagatggattgact
ggccccataggagaactaggccccgatggcctcccaggacaaaagggagaacctggcaat
cctggacccagaggaggggtgggtgttggacctgatggaccgattggaccaccaggacca
ggaggacttccgggtgagcagggaaaagtgggaccccctggagccatgggagtgagaggg
ccacagggaccccgtggaccaacaggcccccgtggtgctgcagggatgctgggtggaaca
atggaactgtgctctgacgcatgcccgcatggtgctcctggtcatcctggtttgcctgga
atgaagggtcataaaggggtgaaaggagaagctggagagcctggtaaacaaggacacaag
ggagaggagggagatcagggggcatctggagaagtcggagctcaaggcccagttggatcg
cagggaattcgaggtgccactggtatgattggctccaaaggagaaacggggcctcgaggt
gttgatggggaccctggacctcagggtgttgcaggagccacgggtgatcgaggccaaaga
ggattaatgggagaaactggccctaaaggcgaacagggacctccagggtcaagaggcaac
actggtcttccagggtcaaaaggagacagtggtttgccaggtgtggatggacgtgaggga
attcctggcatgccaggtgccaagggtgctgccggaaaacctggaagccctggggaagtt
ggccttcaaggactccctggtttaccaggaagcccaggaccaaaaggtggaggtggagag
aagggtaatgcaggacaacctggcctcatcggtactatgggatctgtaggtaaacagggt
gaacgtggagaacaaggagaatttggacccattgggcctattggacaacctggagaccga
ggagagcaggggccacctgggccgttgggaaaaccaggagccagaggtcctaaaggtgac
ttgggcttgcctggacttcctggaccaccgggcctgccaggaataaaaggagataggggt
gaagcaggagaacctggaccaaagggagaacagggcgctcaaggtgacgagggatcacca
ggagacaagggagatgttggtgaccctggccaacttggagctaaaggcgaagttggtaac
cagggggatccgggtaatagaggaccagagggtgcccgtgggcagcccggcatcgagggg
cctcctggtagtgctggaccacgtggcatgcaggggaacagaggagctccaggacctcgt
ggcacccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtgtgcatg
cgcgttatgcaggagcagttggcccagttggctgccagtctgaggagaccagagtctgga
gcggtcggactgccaggcagacctggtccccctggtcctcccggaccccaaggtgacagc
ggcttccctgggcatgctggtgcaagaggtctcccaggactcaaagggcccctgggtctg
ttgggtgtcaaggggccgaaaggtgagatgggagacagaggggacaggggacctacaagt
cggggacccaaaggcatgccaggacctcctggactaccaggtgaacctggaaaaccaggc
tacggtcaagatgggcgtgatggagaacggggtccacctggtaccccgggtcagccgggc
gttcctggaccacctggttcagccggaccacccggttactgcgatccttcagcctgtaat
ctgagcgcaggtgccgtccaccagtccctcaaagactcgagcatgaagggaccaggcgga
aactaa
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