KEGG   Carassius gibelio (silver crucian carp): 127970554
Entry
127970554         CDS       T08819                                 
Name
(RefSeq) collagen, type IX, alpha 1b
  KO
K08131  collagen type IX alpha
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib04510  Focal adhesion
cgib04512  ECM-receptor interaction
cgib04518  Integrin signaling
cgib04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127970554
   04518 Integrin signaling
    127970554
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127970554
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127970554
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cgib00535]
    127970554
Proteoglycans [BR:cgib00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   127970554
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 127970554
NCBI-ProteinID: XP_052429130
LinkDB
Position
B13
AA seq 681 aa
MAHAAGVRGPLLLILLEITIICTAQRAGAGPPGPPGVPGVDGIDGERGDPGEDGSAGPDG
DLGKPGSAGLPGLPGADGLTGPIGELGPDGLPGQKGEPGNPGPRGGVGVGPDGPIGPPGP
GGLPGEQGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGTMELCSDACPHGAPGHPGLPG
MKGHKGVKGEAGEPGKQGHKGEEGDQGASGEVGAQGPVGSQGIRGATGMIGSKGETGPRG
VDGDPGPQGVAGATGDRGQRGLMGETGPKGEQGPPGSRGNTGLPGSKGDSGLPGVDGREG
IPGMPGAKGAAGKPGSPGEVGLQGLPGLPGSPGPKGGGGEKGNAGQPGLIGTMGSVGKQG
ERGEQGEFGPIGPIGQPGDRGEQGPPGPLGKPGARGPKGDLGLPGLPGPPGLPGIKGDRG
EAGEPGPKGEQGAQGDEGSPGDKGDVGDPGQLGAKGEVGNQGDPGNRGPEGARGQPGIEG
PPGSAGPRGMQGNRGAPGPRGTQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESG
AVGLPGRPGPPGPPGPQGDSGFPGHAGARGLPGLKGPLGLLGVKGPKGEMGDRGDRGPTS
RGPKGMPGPPGLPGEPGKPGYGQDGRDGERGPPGTPGQPGVPGPPGSAGPPGYCDPSACN
LSAGAVHQSLKDSSMKGPGGN
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggctcacgctgcaggagtgcgcgggccccttttactgattttgttggagataaccatc
atttgcacggcacagagggctggagccggccctcctggtcctcccggtgtgccaggagta
gacggtattgatggcgagagaggtgaccctggtgaagatggatcagctggtcctgatgga
gatcttggaaaaccaggttctgctggacttcctggactacctggagcagatggattgact
ggccccataggagaactaggccccgatggcctcccaggacaaaagggagaacctggcaat
cctggacccagaggaggggtgggtgttggacctgatggaccgattggaccaccaggacca
ggaggacttccgggtgagcagggaaaagtgggaccccctggagccatgggagtgagaggg
ccacagggaccccgtggaccaacaggcccccgtggtgctgcagggatgctgggtggaaca
atggaactgtgctctgacgcatgcccgcatggtgctcctggtcatcctggtttgcctgga
atgaagggtcataaaggggtgaaaggagaagctggagagcctggtaaacaaggacacaag
ggagaggagggagatcagggggcatctggagaagtcggagctcaaggcccagttggatcg
cagggaattcgaggtgccactggtatgattggctccaaaggagaaacggggcctcgaggt
gttgatggggaccctggacctcagggtgttgcaggagccacgggtgatcgaggccaaaga
ggattaatgggagaaactggccctaaaggcgaacagggacctccagggtcaagaggcaac
actggtcttccagggtcaaaaggagacagtggtttgccaggtgtggatggacgtgaggga
attcctggcatgccaggtgccaagggtgctgccggaaaacctggaagccctggggaagtt
ggccttcaaggactccctggtttaccaggaagcccaggaccaaaaggtggaggtggagag
aagggtaatgcaggacaacctggcctcatcggtactatgggatctgtaggtaaacagggt
gaacgtggagaacaaggagaatttggacccattgggcctattggacaacctggagaccga
ggagagcaggggccacctgggccgttgggaaaaccaggagccagaggtcctaaaggtgac
ttgggcttgcctggacttcctggaccaccgggcctgccaggaataaaaggagataggggt
gaagcaggagaacctggaccaaagggagaacagggcgctcaaggtgacgagggatcacca
ggagacaagggagatgttggtgaccctggccaacttggagctaaaggcgaagttggtaac
cagggggatccgggtaatagaggaccagagggtgcccgtgggcagcccggcatcgagggg
cctcctggtagtgctggaccacgtggcatgcaggggaacagaggagctccaggacctcgt
ggcacccagggaccagcgggtaaagaaccaagtgatcaacacatcagacaagtgtgcatg
cgcgttatgcaggagcagttggcccagttggctgccagtctgaggagaccagagtctgga
gcggtcggactgccaggcagacctggtccccctggtcctcccggaccccaaggtgacagc
ggcttccctgggcatgctggtgcaagaggtctcccaggactcaaagggcccctgggtctg
ttgggtgtcaaggggccgaaaggtgagatgggagacagaggggacaggggacctacaagt
cggggacccaaaggcatgccaggacctcctggactaccaggtgaacctggaaaaccaggc
tacggtcaagatgggcgtgatggagaacggggtccacctggtaccccgggtcagccgggc
gttcctggaccacctggttcagccggaccacccggttactgcgatccttcagcctgtaat
ctgagcgcaggtgccgtccaccagtccctcaaagactcgagcatgaagggaccaggcgga
aactaa

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