Carassius gibelio (silver crucian carp): 127970789
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Entry
127970789 CDS
T08819
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04137
Mitophagy - animal
cgib04140
Autophagy - animal
cgib04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127970789
04137 Mitophagy - animal
127970789
04148 Efferocytosis
127970789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127970789
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127970789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
PAS_2
HLH
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
127970789
NCBI-ProteinID:
XP_052429483
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All DBs
Position
B13:complement(11094301..11107138)
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AA seq
727 aa
AA seq
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MDSVAPGKKRVSSERRKEKSRDAARCRRGKESEVFYDLARELPLPHSVTSNLDKASVMRL
ALSYLRLRKLLNTEVLNVESELDSQWNSSYMKALDGFLMVLSADGDIVYLSENVSKCLGL
PQIDLTGHNVFEFTHPCDHEELREMLAHRTGLSKKVKEQHTNRSFLLRMKCTLTSRGRTV
NVKSASWKVLRCSGHIHTTDGIKKGVCEEKNVCSTYLVLICESIPHPTNIEAPLDSRTFL
SRHTLDMRFTYCDERITELLGFEPVDLLQHSVYEYYHALDSDHMTKTHHNLFIKGQVCTG
QYRLLAKAGGFAWAETQATVIYNSKNSQPQCVVCINYILSGIEQPKQILSLQQTNSTKIK
QEQEEHYEESLGTEVSTEELKEAIKANNEKKEECVREELHDSLKGEPEALTVADPVLALD
ITSTESALSVLTEIPLYNDVMLPSSSVLLPLSPLSPTCSSLNDDDPSTAHLQPDDFQIPQ
SSPPDPSRSQVNLPLDSELSEQLKPDHVERLFSMDIDSKTPFNTQGVGLDLEMLAPYIHM
EDDYQLRTASPAESMCSSPGSALELTPSSSTQPAPALPAAPLDLVSSDTVPQNTRTTKQD
NSREIIQDSDISSKCQTNPKLLKRKLETIPLSEAIRLGSVLQVVTDFPEKKVRKSDASSS
EGIRHATILLLPSDVASRLLSRSSEGGAVTMPLPQLTRYDCEVNVPVTGRQHLLQGEELL
CALDLLI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcacctgggaaaaaaagagtgagttcagagcgaaggaaggagaaatcc
agagatgcggcacgttgtcggagaggaaaagagtcagaggtgttttatgacctggccaga
gaactgcccctcccccacagtgtgacctctaacctggataaagcatcagtaatgagactc
gcactcagttacctgcgcctgcgtaaactactgaacacagaggtactgaatgtggagtcg
gaattagattctcaatggaacagttcatatatgaaagctctggatgggtttctcatggtt
ctttctgctgatggcgacatcgtctacctgtcagaaaatgtcagcaagtgtctgggcctt
cctcagattgacctcactggacacaatgtgtttgagtttactcatccatgtgaccatgag
gagctcagagaaatgctggcacacaggactggtctgtctaagaaagtgaaagagcagcac
acaaacagaagctttctattgaggatgaaatgtacactgaccagtagagggcgcactgtc
aatgtcaaatctgcctcctggaaggtgttgcgctgttcgggccatatccacacaacagat
ggcatcaagaagggtgtgtgtgaggaaaaaaatgtgtgttcaacgtacctggtgcttatc
tgtgagtctattccccacccgacgaacattgaggctcctctggattctagaacatttctc
agccgccacactttagatatgcgcttcacctactgcgatgagaggatcacagagctgttg
ggtttcgagccagtggatctgttgcagcattctgtgtatgaatactatcacgcgctggat
tctgaccacatgaccaaaacacaccacaacctgtttataaagggacaagtgtgcactgga
cagtaccggctccttgctaaagcaggagggtttgcttgggcagagactcaagccactgtg
atctataacagtaaaaactcccagccgcagtgtgtggtctgcattaactacatcctcagt
ggcattgaacagcccaaacaaatcctgtcccttcagcaaaccaacagcacaaaaataaaa
caggaacaggaagaacactatgaggagtcactcggaactgaagtgagtacggaagagttg
aaagaagcgataaaggcaaataatgagaagaaagaggagtgtgtgagagaggagctacat
gacagcctgaagggggagccagaagcactgactgtagcagaccctgtcctcgctctggat
atcaccagcacagagtctgcactttctgtgttgacagaaatacctctctacaatgacgtt
atgttgccctcttcaagtgtcctgctacctctctcacccctctctcctacctgctcctcc
ctaaatgatgatgatccctccacagcccatctacaacctgacgacttccaaatcccacaa
tcttcgcctcctgatccttccagatcccaggtcaatctccctttggattcagaattaagc
gaacagctaaaaccggatcacgtggagagactattttccatggatatagattccaagaca
ccctttaatacacagggagtgggtttggatctggagatgttagctccatacattcacatg
gaagatgattaccagctgcggactgcttctccagctgagtcaatgtgttccagcccgggt
tcagcgcttgaactgaccccctccagcagcacacaacctgcccctgctctcccagcagcc
cctctagacttagtgtccagtgacactgttccacagaacactagaaccacaaagcaggac
aacagcagggaaattattcaagacagtgatatttcttccaaatgtcagaccaacccaaag
ctactcaagagaaaactggagaccatacctctgtctgaagcaataaggcttggttctgtg
ctgcaggtggtgactgattttccagagaaaaaggtcagaaaatcagacgcttcatcatca
gaagggattcgtcatgccacgatactgttgctgccatctgatgttgcgagtaggttattg
agcagatcatcagagggtggagccgtaacgatgcccctcccccagcttacccgttatgac
tgtgaggttaatgtgcctgtgactgggcggcagcacctgctacagggggaggagctactg
tgtgccttggacctacttatttaa
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