Carassius gibelio (silver crucian carp): 127971090
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Entry
127971090 CDS
T08819
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127971090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127971090
03036 Chromosome and associated proteins [BR:
cgib03036
]
127971090
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127971090
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127971090
PBAF complex
127971090
GBAF(ncBAF) complex
127971090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
127971090
NCBI-ProteinID:
XP_052429830
LinkDB
All DBs
Position
B14:8509956..8523083
Genome browser
AA seq
1041 aa
AA seq
DB search
MAVRKKDGGPNVKYFETSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKLSSSHVVVP
IPASLEDEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAAVEDPPTAEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPRRKRISAKTLTDEVSAPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKDLDEPSPVPAVEEATLPKTV
TKKDSDSTPVKGGTMTDLDEQEDESMETVGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPKEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKASQTPSSQQMLSFPDKVKDKPADLQNFGLRTDVYSKKSGPTKTKNAASATREWTD
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSSLGPLAHQP
VPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEDAA
RASGRPDPLYGLEGSGIAGTILEDSDKPSEDGSEENKSNDGQSSQDKRDNKESKDGASEE
EEKQGENGKKEEERVREGETERETEKTDSEMADGEKEKERKEGPEEGQRDGESEGEKKAK
VERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPANQSG
STPSVPHQPVTNASAPPPTQSPASVSTPNAHSEAPPSASHSSPPTNAQTGSAHGNDIEIY
KSSTQLPGDSLYPNAPVPPTQ
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaaacgtctgatacc
gtctcgcagttcgacaatgtccgggtttggctgggcaagaattacaaaaagtatattcaa
gcagagcccccaaccaataaatctttgtcaagtctggtggttcagctgcttcagtttcag
gaggaagtgtttggccgacatgtcagcaaccctcccctcactaaactaccgatgaagtgt
ttcttggatttcaaatctggaggagctctgtgtcatattctggctgctgcctacaagttc
aagagtgatcaaggatggaggagatttgacttccagaatccttcgagaatggaccgcaat
gttgaaatgttcatgactatagaaaagtctttggtacagaataactgtttgtcacgacct
gtgatttacctgagttcagagatagagcccaagctactgggaaaactgaaggacatcatc
aaacgacaccaggggtctgtgactgaagataagctgtccagctctcatgtagtggtgcct
atccctgctagtctggaggacgaagagtgggttcgtcctgtaatgaagagagacaaacag
atgctgctacactggggctactggcctgacagttatgacacatggatctcagccagtgag
gtggaggctgctgtggaggatccgcccactgctgagaaacccaggaaggtccatgccaag
tggattctggacctagatcagtttaacgagtggatgaatgaggaagactatgaggtggga
gaaggaggaccgcggaggaagaggatttcagcaaagactctcacagatgaagtgagcgct
ccagatgaaaggagggataaaaaacccagcagtgccaaaaaaaggaagcgctccccgtct
ccatctcctacccctccaccacaagagagcaagaagaaaaacaccaagaaagggcccact
actccctacactaagtccaaacgaggacagagagaagaagaacaggaagatttgacaaaa
gatttagatgaaccctcacctgtgcctgcagtggaggaagcaacactacctaaaacagtg
acaaagaaggactctgattccactccagtgaaaggaggcactatgactgacctggatgag
caagaggatgaatcaatggagactgtagggaaggaagaagaagaaggttctccgagtgtg
aaaggagaaccggtgaagggttcggaccttcatgaggataatgtcaccgaacagacccat
catatcattatccctagctatgccgcttggtttgactataacagtgtccatgctatagag
cgcagggcactgcctgagtttttcaatgggaaaaacaagtcaaagactcctgaaatttat
ctggcataccgtaacttcatgatcgacacatatagactgaacccgaaggagtatttaacc
tccacagcctgccgtaggaacctggctggagatgtctgtgctattatgagggtccatgca
ttcctggagcagtgggggttgattaactatcaggtggattcagagagtcggcccactccc
atggggcctccacccacctcacactttcatgtgctggcagatactccatcgagtctggta
ccactacagcctaaagcatcccagactccatcctctcaacagatgctgtcattcccagac
aaagtaaaggacaaaccagctgacttgcagaactttgggttgaggacagatgtgtacagt
aagaagagcggcccaactaaaactaaaaatgctgccagtgccactcgggaatggacagac
caggagacgctgctactgctagagggtctggagatgtataaagatgactggaataaagta
tcggagcacgtgggaagccgcacccaggatgagtgcatcctccacttcctgcgtctgccg
atcgaagacccctacctggaggacagctcttcctccctgggcccgctggcccatcagcca
gttcccttcagtcaggcggggaatcctgtcatgagtactgtggcattcctggcctccgtg
gttgaccctcgagtggcttccgctgcagctaaatctgcactagaggagttttcacgaatg
aaggaggaggtcccggctgcgttggtggaggctcatgtgcgtcgagtggaggacgcggcc
agagcaagtgggaggccagaccctctctatggcctggagggcagcggcatcgcaggaacc
atcctcgaagattctgacaaaccctctgaggatggaagtgaagagaataagagcaatgat
ggtcaatctagccaagataaaagagacaataaggagagcaaagatggagccagtgaggag
gaagaaaaacaaggagagaatggcaagaaagaggaggagagagtgagagaaggggagaca
gagagagagacggagaaaacagattcagaaatggccgatggcgagaaggagaaagaacgg
aaggagggaccagaagagggtcagagggatggagagagtgagggagagaagaaagcaaag
gtggagagagacgtaggagagggaaaccttgccaccgccgctgcttctgcactcgctgct
gctgccgtcaaagctaagcacttggcagcagtggaggaaaggaagatcaagtctctggtg
gctctgctggtagagacccagatgaagaaactggagatcaaactcagacactttgaagag
ctggaaaccatcatggacagagagagagaggccctggagtatcagaggcagcagcttctc
gctgatcgtcagtcgtttcatatggagcagttgaagtatgcagagatgagagcccgacag
caacacttccagcagatccaacaccagcaccatagcaaccagcctgccaatcaatctggc
agtactccatctgtaccccaccagcctgtcactaacgcctctgccccgcccccaacacaa
agccccgcctccgtgagcacccctaatgcccacagtgaagctcctccatctgcatctcac
agttctccgcccaccaacgcacagactggatcagcgcatggtaatgacatagaaatatac
aaatccagcactcaactcccaggggattctctctatccaaacgcccctgtgcctccaaca
cagtaa
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