Carassius gibelio (silver crucian carp): 127971136
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Entry
127971136 CDS
T08819
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127971136
09122 Translation
03013 Nucleocytoplasmic transport
127971136
03015 mRNA surveillance pathway
127971136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127971136
03041 Spliceosome [BR:
cgib03041
]
127971136
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
127971136
Spliceosome [BR:
cgib03041
]
Common components
Common spliceosomal components
Cap binding complex
127971136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
FapA
GBP_C
MG280
AAA_11
Vfa1
tRNA_bind_2
EMC3_TMCO1
DUF4407
DUF7197
Motif
Other DBs
NCBI-GeneID:
127971136
NCBI-ProteinID:
XP_052429908
LinkDB
All DBs
Position
B14:complement(13209190..13223151)
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AA seq
797 aa
AA seq
DB search
MSRRRHSDESDAGSQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEA
DLPNYKNKILRILCAVARLLPEKLPVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKSN
LYSEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDIPQVRSDWYVYAVLSSLPW
VGKELYEKKDVEMDRLLNQIEGYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQVQKL
KKDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHSDDAVYPMPHVVFRMFDYTDAPE
GPVMPGSHSVERFVIEENLHCIIKSHWRERKTCAAQLLSYPGKNKIPLNYHIVEVIFGEL
FQLPGPPHIDVMYTALLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCVDRLINWFSH
HLSNFQFRWSWDDWADCLTQDIEKPKPKFVKEVLEKCMRLSYHQRIVDIVPPSFSALIPA
NPVCSYKYGEEADSSLPGFAMTTIVGNAIKNRASNEEILIVLKDVPNPNQDDDDDEGDGF
NPLKIEVFLQTLLHLAAKSSSHSFSALAKFHEVLKTLTDSDEGKLHILRVLYDFWRNHPQ
MISVLVDKLIRTQIVDCAAVANWIFSPEMAHDFTRFYVWEILHSTIRKMNKHVQKIQKEL
DEAKVKLEKQQNKKQPDSGDEEDMEKNSEDEEGQLEEQIERLQEKVESAQSEQKNLFLVI
FQRFIMLLTEHLVRCETSGVDINTTWYKNCIERLQQIFLMHHVIIQQYMGTLENLLFTAE
LDHHILTVYQQFCALQL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcgaaggcacagcgatgagagtgatgccggctcccagcctcacaaacggagg
aggacatctgaacccattgagatcgaagaccgcttggagtcactgatatgtcgtgtggga
gagaagagtacgtcctccttagagagcaatttggagggccttgctggtgtcctggaggcg
gatcttcctaattataaaaacaaaatcctacgcatcttatgtgctgttgcaaggcttttg
ccagagaagttacctgtgtacacaacactagtgggacttctcaatgctcgcaactacaac
tttggaggagagtttgtggaggccatgatccgacaacttaaggagacactcaaatcaaac
ctttactctgaggctgtttacttggtgcgctttctcagtgacctggtgaactgtcatgtc
atcgcggctccatccatggttgctatgtttgagaactttgtcagtgtcacgcaggaagaa
gacataccacaggtgcggtctgactggtatgtgtacgctgtgctgtccagtctgccttgg
gttggcaaagaactgtatgagaagaaggatgtggaaatggatcgcttgctcaaccaaatt
gaaggatatttaaagcggcgtcaaaagactcatgttcctatgctccaggtgtggaccgca
gaaaagccccacccacaggaagagtatctggactgtctctgggctcaggttcagaagctg
aagaaagaccgctggcaggagcgtcacatcctgcggccttatattgcatttgacagcgtg
ctgtgtgaagccctgcagcacaacctgcccccttttacacctccagcccactctgatgac
gccgtctaccccatgccccacgtcgtcttccgcatgttcgactacactgatgccccagag
gggccagtgatgccaggaagtcattcagttgagcgctttgtgattgaggagaacctgcac
tgcataatcaagtctcactggagagagaggaagacctgtgctgctcaattgctcagctac
cctggaaaaaacaagattccccttaactaccacattgtggaggtgatatttggtgagtta
ttccagctgccgggtcctcctcacattgatgtcatgtacactgcattactcattgagctc
tgcaaactgcaaccgggctctttaccacaagttcttgctcaagccacagaaatgatgtat
atgaggctggacacaatgaacacaacctgcgtagaccggctcatcaactggttctcccat
catctgagtaacttccagttcagatggagctgggatgactgggctgactgcttgactcaa
gatattgaaaaacctaaacccaagtttgttaaagaggttttggaaaagtgtatgaggttg
tcataccatcagaggatagtggacattgttcctccgagtttctctgcgctgatcccggct
aaccctgtgtgtagctataaatacggagaggaggctgacagttcattaccaggattcgct
atgacaactatagtgggtaatgccatcaaaaaccgggcatctaatgaggagattcttatt
gttctaaaagatgtccctaatccaaaccaggatgatgacgatgatgagggtgatggcttc
aaccctctaaagattgaagtgttcctgcagacgctgctccatttggctgcaaagtcttcc
agtcattccttcagtgccctggccaaattccatgaggttctgaagacccttacggacagc
gatgaggggaagctgcacatcctcagggttctgtatgacttctggaggaaccatcctcag
atgatctccgtgttggtggacaagctgatacggacccagattgtggactgtgcagctgtg
gcaaactggatattttctcccgaaatggctcatgatttcaccaggttttatgtgtgggag
attctacattctaccatccggaagatgaacaaacacgtgcagaagattcagaaagagttg
gatgaggcaaaagtaaagctggagaagcaacaaaacaaaaagcagccggacagcggcgat
gaagaggacatggagaagaacagtgaggatgaggagggtcagttggaggaacagatcgag
aggctgcaggagaaagtagagtcggcccagagcgaacagaagaaccttttccttgttata
ttccagcgcttcattatgttactgactgagcacctggttcgctgtgaaacgagcggcgta
gacatcaacaccacctggtacaagaactgcatcgagaggctgcagcagatcttcctcatg
catcatgtgatcatccagcagtatatgggcacccttgagaacctgctgtttactgctgag
ctcgaccatcatatcctgaccgtttaccagcagttctgtgcccttcagctctga
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