Carassius gibelio (silver crucian carp): 127971304
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Entry
127971304 CDS
T08819
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127971304
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
127971304
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgib04515
]
127971304
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127971304
Cell adhesion molecules [BR:
cgib04515
]
Cadherins
Protocadherins
127971304
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_4
He_PIG
Cadherin_CELSR2_9th
DUF7171
Motif
Other DBs
NCBI-GeneID:
127971304
NCBI-ProteinID:
XP_052430151
LinkDB
All DBs
Position
B14:24878059..25031394
Genome browser
AA seq
1212 aa
AA seq
DB search
MMCQSANAMWSRWSAMLVWIFLLLCCSANVVSTIIYQVTEEQPPNTLIGSLASDQGLPDT
GHLYKLEVGAPYLRVDGKTGDIYTTENSIDRETLKDCRNLFEGDPCFLEFEVSITDLMKG
TGPRLIEGRIEILDENDNTPQFSSPVLTLSIPENTHVGALFAIPLATDRDSGSNGIADYA
LTTGPEAANLFSLQVAQDSDEKLPQLIVLGNLDRELRDSYDLNIKVIDGGSPPRQSSALL
RITITDANDNVPKFEKSHYEGELPENSPVGHTVLQVKANDSDMGPNGEVTYSLHQASSTV
QRLLSIDRNTGTIFVKGLVDREDISMLKFYVQAKDNGPQSKSSKALVTITVKDQNDNAPS
IRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGENAVVTCVVAGDVPFQLRSAS
ETGNDRKRKYFLQTTMLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNSPIF
SPSLYEVEFAEENQSGDKVLDVVATDADSGTNAELTYSITGGSLPEGLFVINPNTGEVRV
MSQLDREQLDHYQFLVAAADKGVPSLRGTATVVLKVLDRNDNDPKFMLNGYSFSVQENMP
PLSPVGMVTVNDRDKDENAHVELSVEPDNGKFMIQNGTYTILSTISFDRERESTYSFRLK
AVDGGDPPRSSYVGITINVLDENDNAPYVTKPSNSSYKFLDPRTSPETHVERVEAEDMDI
GLNSEMDFSIVGGNPHGLFRISSEGEITLAKEFTSKHIGLHRLVVKVKDKGTPPRHTTAL
VHIYVNETIGNVSHVEGLVGHSLYTPLEMDIAGDPDYSRDQQNNIIFAVLGGFCVVVLII
AVAMIIRHVMLKENKSGYQAGKKETKDLYAPKPGPKSNKNKKAKKSKAPKPANPSEEDEG
GSLQKGLKFNLMNDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKK
HQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANSSKYSTKQLPHRRVTFSTANQAQDL
QDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRP
LPDVAMTGKCTRECTEYGHSDSCWMPGQPSPNRTKSAKGGPKLSTFVPYQEREGQEHLMA
DSSSKPHGEERSGGGNNKVASIRFLPPYTSAYSTGGDSGKDCPREEIPLSQTADYAPATT
PSSQGSKREIYL
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgccagagtgccaatgcgatgtggtcacggtggagtgccatgctagtgtggatt
ttccttcttctctgttgttctgcaaatgtcgtcagcaccattatctaccaggtaaccgag
gagcagccgcctaatacactgattggcagcttggcatctgaccagggcttgccagacact
ggccacctttacaagcttgaggtgggtgctccttacctccgtgtggatggcaaaacaggg
gatatctacaccacagagaactcgatcgatcgtgagactctcaaggactgccgcaacctt
ttcgagggcgatccttgtttcttagaatttgaggtatctattacagacctgatgaagggc
acaggacctcggctcatcgaaggccgcatcgagatcttggatgagaacgacaacactcca
cagttctcttcacctgtcttgacgttgtcgatcccggagaacacgcacgtcggtgcgctt
tttgccatacctctggccaccgacagagattctggaagcaacggcatcgccgattatgcc
ctaacgactggccctgaagctgccaaccttttcagcctgcaggtggcgcaagactcagat
gagaaattgccacaactcattgtattgggaaacctggatagagagctgcgagattcatat
gacctcaacataaaagtgatcgatggtggctctccaccccgccagagtagcgccctgctc
aggatcaccatcacagatgccaatgacaacgtgcctaaatttgagaagtctcattatgag
ggtgagctcccagaaaacagcccagtgggtcatacggttctacaagtgaaggccaatgac
tccgacatgggaccaaatggagaggtgacctacagcctccaccaggcatcatcgactgtc
cagaggctccttagcattgaccgcaacacaggcaccattttcgtcaaaggcttggtggat
cgtgaagatatcagcatgctcaagttctacgtccaagctaaagacaatggtccacagtcg
aagagctccaaagcccttgtgactattacagtgaaggaccagaatgacaatgcaccctca
atcagaatccggggtattggccttgtgacacatgaagatggtgttgctaacatatcggag
gacatgcctgtaggcacagctgtggctctggtggaggtatcagatcgtgatgaaggtgaa
aatgcagttgtaacctgtgtggtggcaggggatgtcccattccagctgcgttcagctagt
gaaacaggcaacgaccgcaagaggaagtacttccttcagacaaccatgctgttggactac
gagcggatcaaagactacaggattgaaattgtggcagtggactctggcaaccctgcacta
tccagcacaaattccctgaaggtgcaagtgacagacatgaatgacaactccccgatcttt
tcgccctctttgtatgaggtagaatttgctgaggagaaccagtcaggtgacaaggttctg
gatgtggtagccacagatgccgacagtgggactaatgcggaactgacatacagtatcact
ggtgggtcactccccgaggggctatttgtaattaaccctaatacaggagaagtgcgtgtc
atgagccagttggaccgtgaacaattagatcactatcaatttctagtcgcagcagctgat
aaaggtgtaccaagcttgagaggaactgccactgttgttcttaaggtgctcgacaggaac
gacaatgaccctaaattcatgctcaatggttacagcttttcagtccaagaaaacatgcca
ccccttagtcctgttggaatggtaacagtcaatgatcgtgacaaggatgaaaatgctcat
gttgaactctctgtagaaccagacaatggcaagtttatgattcaaaatggaacatacacc
atactttcaactatttccttcgacagagaaagggagagcacctacagtttccgacttaaa
gctgttgatggaggtgatccaccacgttcctcctatgttggcattaccattaatgttctt
gatgagaatgacaatgctccatatgtcactaagccctcaaactcttcatacaagttcttg
gatccccgcaccagcccagaaacccatgtagaacgtgttgaggcagaggacatggacatc
ggtttaaattcagagatggatttcagtattgtagggggcaaccctcatggcttgttccgg
atctcttcagagggtgagattacgttggctaaagagttcacatccaaacatattggtctc
catcgtctggtagtaaaagttaaggacaaaggcacgccaccacgccatacgaccgcactg
gttcacatttatgtcaatgagaccatcggcaatgtctcccacgtcgaaggacttgttgga
cacagtctttatacgccactcgaaatggacattgcgggagatcccgattattctcgagac
cagcaaaataacattatttttgcagtcttgggtggcttttgtgtggtcgttctaatcatt
gcagtggctatgatcatcaggcacgtcatgttgaaggaaaataaaagtggctaccaagca
ggcaagaaggagaccaaagacctatatgcccccaaaccaggacctaagagcaacaagaac
aagaaggcaaagaaaagcaaagctccaaagcctgccaacccatctgaggaggatgagggg
gggagtctccagaaaggcctaaagttcaacctcatgaatgatagcgtcaacgatagccct
aggattcacctgccgctcaactacccccctgggagcccagacctggggcgacactatcgg
tctaattctcctctgccatccattcagctccaacctcagtcaccttctgcctcaaagaaa
caccaggcagtgcaggacctgccggccaccaatacctttgtaggaaccggggacaacaac
tcaacaggctcagaccagtattcggattacagctacaaggccaactcttcaaaatatagc
accaaacagctcccacatcgccgagtgaccttctccacagccaatcaggcgcaagatctg
caggatccctctcagcacagttactacgacagcggtctggaagagtcagagacacccagc
agtaagagttcttcagggccccgtatcgggcccctcgccctacctgaagaccactacgaa
cgcactaccccagacggcagcatcggagagatggaacaccccgagaacgatctgaggcct
ctgcctgatgtggccatgacgggaaaatgcacacgtgagtgtacagaatacggccattcg
gattcctgctggatgcctggacaaccctcacccaaccgcaccaagagtgccaagggcggg
cccaagctctccaccttcgtgccttaccaggagagggagggtcaggagcacctgatggct
gacagcagctctaagcctcacggagaggagcggagcggaggtgggaacaacaaagtggcc
agcattcgctttttgcctccctacaccagtgcctattctacaggtggtgactccggcaag
gactgccccagggaggagatccccctgagtcagacagccgattacgcccctgccactaca
ccatccagccaaggttccaaaagagaaatctacctgtga
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