Carassius gibelio (silver crucian carp): 127971822
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Entry
127971822 CDS
T08819
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03008
Ribosome biogenesis in eukaryotes
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
cgib05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127971822
03015 mRNA surveillance pathway
127971822
03008 Ribosome biogenesis in eukaryotes
127971822
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127971822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127971822
03009 Ribosome biogenesis [BR:
cgib03009
]
127971822
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127971822
mRNA cycle factors
Stress granule specific factors
127971822
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
127971822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_9
LRR_8
Motif
Other DBs
NCBI-GeneID:
127971822
NCBI-ProteinID:
XP_052431020
LinkDB
All DBs
Position
B14:12010065..12028414
Genome browser
AA seq
647 aa
AA seq
DB search
MSRLKMTRHREWYPNLSVITRVCESSSDPSGSSVVREVWSTESSFTDHDGRWLGVRRGWG
SIKARLHSGTVRLQHRGAAPESFGPVPRSRFQGGSVCDVSVMNNQYGKSQHRFIPYDRPG
QRGEGWMDKIGGGNAHRFGAEDAERGGKNWFKITIPHGKKYDKKWLLTSLQNLCPIAFIP
LHYSTEGHKVNFYLEDAAAASALCKLTHRVTDSEGNRVAVLMNSWSSPVLKTELKPQDLE
RLKECMSKRFDGSQKSLDLNSIRTDPDLVSHNIEMILNQENCMQAVIKIIQENIPELLCL
NLSNNKLCKLTDIAELVDKVPNLQSLNLSHNELKSEQELDKVKGFKLVELWLDRNPLCDD
FKDQTTYISAVQERFPRLLRLDGHMLPPPICFDVETHTNIPACKGSHFVSNEIQGLIQHF
LQHYYCVYDSGDRQPLLEAYHSDACFSLSLPSINHLSRCRLKNYYEHSRNIKNIKDPSAW
FHLLKRSRLTVVAFLNELPKTQHDMNSVNVDVNTYSRTLLAFTVSGVFKEADDKLRDRVK
AFSRVFITVPARNSGLCIVNDELFVRNATSEEIRSAFAAPAPSNCPVLPTLMPSQQEMLP
AFSQMSGMNLEWSQKCLQDNAWDFNRAAQIFSELKAQGKIPEAAFIK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggttgaagatgactcgacaccgggaatggtaccccaacctgtctgtgataaca
cgggtttgcgagagttcttcagatccgagtggctcttctgtagttcgagaagtgtggagc
acagaaagctctttcacagatcatgacggccgctggttgggggtccgtcgaggttggggg
tccatcaaggctcgtctacacagtggtacagttcgcttgcagcatcgaggtgcagcccca
gagtcgttcgggccggtaccccgcagcaggtttcagggcggcagtgtctgtgatgtgtct
gtgatgaataatcagtatgggaagtcacaacacagatttattccatatgaccgtcccggt
cagagaggagaggggtggatggacaagattggagggggaaacgcacacagattcggagca
gaagatgcagagagaggagggaaaaactggtttaaaattacaatcccacacggaaaaaag
tatgataagaaatggcttctaacatcactacagaatctctgccccattgcgttcattcca
ttacactactccacagagggacataaagttaatttctatctggaggatgctgctgcggct
agcgctctgtgcaaactcacacacagagtcacggacagtgaagggaaccgggtggccgtg
cttatgaacagttggtccagtccagtcctaaaaaccgagctgaaaccacaagatctggag
cgtttaaaggaatgcatgtccaaacgctttgacggttcccagaagtctctcgacctgaac
agcatccgcactgatcctgacctggtttcccataatattgagatgatcttaaatcaagaa
aactgcatgcaagctgtgatcaaaatcatacaggagaatatcccagagttgttgtgtttg
aatctgagtaacaacaagctgtgtaagctgactgacattgcagaacttgtggacaaagtc
cctaacctgcagtccctgaacctatctcataatgagctgaagtcagagcaagagctggat
aaggtgaaggggttcaagctggtggagctctggttggacaggaaccctctgtgcgatgac
ttcaaagatcagaccacatacattagtgctgttcaggagagatttcccaggcttctgaga
ttggacggtcatatgcttccacctccaatctgctttgacgtggaaacacacacaaacata
cctgcttgcaagggcagccactttgtatcgaatgaaatccagggactcattcagcatttt
ctgcaacattattactgtgtgtatgactctggggacagacagccgctgctggaggcatat
cacagtgatgcctgcttctctctcagcctgccatcaataaaccatctctcaaggtgcagg
ttaaaaaattattatgaacacagccgcaacatcaagaacatcaaagatccctccgcttgg
ttccacttgctaaaacgctcccgcctgactgtagtcgccttcctcaacgaactcccaaag
acccagcatgacatgaattcagtcaatgttgatgtcaacacatactccaggaccttatta
gcgttcacagtcagtggagtgttcaaagaagctgatgacaaattgagagaccgtgtcaag
gctttctccagagtcttcatcacagttccagctcggaattctggtctgtgtattgtgaac
gacgagctctttgtgagaaatgccaccagcgaggagatacgcagtgcatttgcagcacca
gccccctcgaattgcccagtgttgcccaccctcatgccatcccagcaggaaatgctgcct
gctttctcccagatgtctggaatgaacctggaatggtctcaaaaatgtctgcaggataac
gcatgggattttaaccgagctgctcagattttctcagaactcaaggctcaaggaaagata
cctgaagctgctttcataaaatga
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