Carassius gibelio (silver crucian carp): 127971842
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Entry
127971842 CDS
T08819
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgib04054
]
127971842
Pattern recognition receptors [BR:
cgib04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
127971842
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
TIR
TIR_2
LRR_1
LRR_9
LRR_EndoS
LRR_NXF1-5
ThsB_TIR
Motif
Other DBs
NCBI-GeneID:
127971842
NCBI-ProteinID:
XP_052431057
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Position
A4:complement(16313790..16317881)
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AA seq
934 aa
AA seq
DB search
MSKREHGLCFSKYRSLTSWLLYCCIFISLVNGYSVKNCTVRGSLKYAQNINVFCDKRSLH
FVPRNIPDKATYLDISNNVIQKIIKEYFSQLSNLKSLNALHNKIREVEEGAFSSLVALQE
LNLAYNKLTNILGGMFQNLGNLTVLHLNENSITNIHFSAFSPLVSLRKVNLSRNHLKKIS
KVQPLFLLPQLQELHIGSNGFTFFQTSELSNISVRLQVLDLFKNPLKVFSITADIFPHLD
NLVLAFITGNMTWDVQDKRYLQSVKHLNLSGIQLPLEKIKDLIQTFNSSLASLRLHFLGD
IKVRALIRDVCLISSLKFLGLQWNNITSISKDEMQFCTQLTELDLSNNKLYSVPAVISSL
PGLRFLDLTFNNIKNISSVDFANLTQLQTLQIYSNEISFIEEFAFKHLKNITTLMIGSNR
LSLNRYFKRDLQKLEILDLANNKLDSVRRGHFDSLNSLKNLSLPDNQISFIEAGSFNELT
NLIFLNLQSNKLSQRSIKASVFSKLPNLKTLLLNNNYISYNSQEPLEQPPFQYLKKLKTL
NIFSQGHKGMLYLPSNLFKGLWHLEELQAENLNINSLHPDTFTYTPYLWVLDLSRNDFIL
LTTKIFLPLHVLKTLHLSKVGLQSLDFLINANLSKLHLLHVSKNALSVINETVIQSFPTL
IYLDLRGNYLSCDCTNAWFVNWTISSNDTEVESAYELTCNYPDKLKGHKLMDLNIGSCNV
DVGFFCFISTATLVSVTLLCTFLFHFLKWQVIYAYYLFLALLHDNKQQRKPNGLQYDAFI
SYNVHDELWVMRELLPQLEGEQGWKLCLHHRDFEPGKPIMDNIVDGIYSSRKTICVISRH
YLESEWCSREIQIASFRLFDEKKDVLILVFLENIPSHQLSPYYRMKRLIQRKTYLSWPKP
GEDTRVFWQKLRIALETKGNSEMEPHIGWDLGVN
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagagagaacatggtttgtgtttcagtaaataccgtagtttgacctcatggctg
ctctactgctgtattttcatcagtcttgtaaatggatactcagtaaagaactgcactgtt
agagggtctttaaaatatgcacaaaacataaatgtgttttgtgataagaggtccctgcat
ttcgtaccaaggaatataccggacaaagccacatatttggacatttcaaataatgtcata
cagaagataatcaaggagtatttctctcaactgtctaatcttaaaagtcttaatgcacta
cacaataagatccgggaagtggaagaaggagcattcagcagtttggtggctttgcaggag
ttaaatctggcctacaacaagctgacaaatatcttgggaggaatgtttcagaatctggga
aatctcactgtcttacatctaaatgaaaactcgatcacaaatattcacttctctgcattt
tcacccctggtcagtttaagaaaagttaatctgtccagaaatcatctgaagaaaatcagc
aaagttcagcctctctttttattaccacaattacaggaactgcacattgggagtaatggc
ttcaccttttttcagacctcggagctgtccaacatatctgtgagactacaagttctggat
ttatttaaaaatcctttgaaagtgttcagtatcactgccgatattttccctcaccttgat
aatttggtcttggcttttattactggaaacatgacgtgggatgtacaggacaaaagatat
ctacaaagtgtgaaacatctaaatttaagtggaatacaattgcccttggagaagatcaaa
gatctcatacaaaccttcaactcttcattggccagcctgaggttacactttctgggggat
ataaaagtgagagctttgataagagacgtctgcctgatttcatctttgaaatttctaggc
ttgcagtggaacaatattacatccatatcaaaagacgagatgcagttctgcacacagtta
actgagcttgatctctctaataacaaactatacagtgtccctgctgtcatcagcagccta
ccaggtcttcgttttttggacctcaccttcaacaatataaagaacataagtagtgttgat
tttgctaacttaacccaattacagacccttcagatctatagcaatgaaatatcttttatt
gaggaatttgcttttaaacatctgaaaaacataacaactctaatgattggatctaacaga
ctctctctcaacagatattttaaaagagatcttcaaaaacttgagattttggatctagca
aataacaagctggactctgtccgtaggggacattttgactccttgaattcacttaagaat
ttgtctctaccagacaatcaaatatcatttattgaagcagggtcctttaatgaactgacc
aatttaattttcctgaatttgcaatcaaacaagctctctcagcgttcaataaaagcttct
gtgttttccaaactcccaaacctgaaaacacttctgctgaacaataactatatttcatat
aacagtcaagagcctcttgaacaaccaccctttcaatatctgaaaaagctaaagactctg
aacatttttagccaaggtcataaaggaatgctttatttaccttcaaaccttttcaaggga
ttgtggcatttggaagaacttcaagcagagaatcttaatataaattctttacatccagat
acatttacttatactccttatctgtgggtactggatcttagcagaaatgattttatttta
ctcacaacaaaaatatttctgccacttcatgtcctaaagacactccacctgtctaaagtt
ggcttgcaatctttggactttcttataaatgcaaatcttagtaaactacatctgttgcat
gtaagcaagaatgcattatcagtcattaatgagacagtgatccagtcttttccaacattg
atttaccttgatctacgaggcaattatctctcatgtgactgtaccaatgcctggttcgtc
aactggaccattagtagcaatgacacagaagttgaaagtgcttatgaactcacatgcaat
tacccagacaaactcaaaggacataaactcatggatcttaatataggttcatgtaatgta
gatgttgggtttttctgtttcatttccactgccacactagtctctgtgacccttctttgc
acttttctctttcacttcctcaaatggcaggttatttatgcttactacctttttcttgct
ttactccatgataacaaacagcagagaaagcccaatggtttgcagtatgatgcttttatt
tcctataacgttcatgatgaattgtgggtaatgagggaactgttacctcagttggaaggc
gagcaaggctggaagttgtgtctgcatcacagggactttgaaccaggcaaaccaatcatg
gataatattgttgatggcatttatagtagtcgaaaaaccatctgtgtgattagccgccac
tacctggaaagtgagtggtgttccagagagatccaaattgctagtttccgtctcttcgat
gagaaaaaagatgttctcatcctggtattcctggagaatattccaagtcaccaactgtct
ccgtactacagaatgaaaagactaatccagaggaagacatatctcagctggcctaaacca
ggagaggacaccagggtcttctggcagaagctgagaatagctctggaaaccaaaggcaac
tcagaaatggagcctcacattggctgggatttaggggtcaactag
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