Carassius gibelio (silver crucian carp): 127972376
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Entry
127972376 CDS
T08819
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127972376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127972376
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127972376
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127972376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
Flavi_DEAD
wHTH-PRTase_assc
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127972376
NCBI-ProteinID:
XP_052431795
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All DBs
Position
B15:7420267..7434191
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AA seq
1053 aa
AA seq
DB search
MANLEQWVSDQLHDILGLSDRYVSQFMIGLVQKSSGPQDFVARLEQTGTIDIDQRITAFA
HELYNKAPKKHVAEKPARAVERQVMEMERKNRTYTLLEDSESDGETARERGKEKKSKDRD
KGKKRKHLRQKRDESSSSSEEDSKKSTKVMDEPKKAAKEDEEEEWEREERERIQDLEERD
AFAERVKQKDKDKTRHILERNDKKAYEEAQKKLKMDEEDKKKMLPELRKQSRWQYLSKRE
QEKIDDLEAEIKDEEYLFSTQNLTEREKKDLEYKRKVRDLARDYKKAGAKEKEERKNRYY
MPEEKRNKSIPQKDMELEFEETPREGGGEQGRWEEARVATATLQFGAREERERRIKEEQE
RYQLILEEEEMINFVSTAITMKGTLSEMESEPELSQAEKQKLSIQEVRRSLPIFPYREDL
LAAIRDHQMLVIEGETGSGKTTQIPQYLLEDGYTNGGMKIGCTQPRRVAAMSVAARVAQE
MNVKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLH
TDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAPE
ADYLEACVVSVLQIHVTQPPGDVLVFLTGQEEIEACCELLQERCRRLGSKISELIVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETSIPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMV
LASEHYKCSEEILTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYTQW
VESGYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVELSSCSGDSVPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVFVHPNSSLFEEQPRWMIYHELVFTTKEFMRQVIEIESGWL
LEVAPHYYKNKELEDSSSKKMPRKQGKAREELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggaacagtgggttagtgaccaactccatgacatactgggtttgagtgac
cgatatgtgtcccagttcatgatcggtctggtgcagaagtcttctggacctcaggacttt
gtggctcggcttgagcaaactggaaccattgatattgatcaaagaatcacagcgtttgca
catgagctgtacaacaaagctcccaaaaaacatgtggcagaaaaacctgctcgggccgtg
gaacgacaagtcatggaaatggagagaaagaaccggacctacactcttttggaggacagc
gagagtgatggcgagacggcaagagaaagaggaaaagagaagaaaagtaaagaccgggac
aaaggaaagaagagaaaacacctccgacagaaacgagacgaaagttcatcgtccagtgaa
gaggacagcaaaaagagcactaaagtcatggacgagccaaaaaaagctgccaaagaagat
gaggaggaagaatgggagcgggaagagagagagagaattcaagatctggaagagagggat
gcatttgctgaacgagtgaaacagaaggacaaagacaagacgagacacatacttgagaga
aacgacaaaaaggcttatgaggaagctcaaaaaaaactcaaaatggatgaagaggataaa
aagaaaatgcttccagagttaaggaaacagtcccgatggcagtatctgagcaaaagagag
caggagaagattgatgacctcgaggctgaaattaaggacgaggaatacctcttctccact
cagaacctcacagaacgggaaaagaaagatttagaatacaagcggaaggtcagagacctg
gcccgagactacaagaaagctggagcgaaagaaaaagaggagagaaagaacagatactac
atgccagaggagaaaagaaacaagtccattcctcagaaagacatggagctggagtttgaa
gagactcccagagagggaggtggggagcagggccgctgggaggaggcgagagtggccact
gccaccctgcagttcggggccagagaagagcgggaacgccggataaaggaggagcaggag
agataccagctcattctagaggaagaggagatgatcaacttcgtcagcacggccattact
atgaaaggaacactgtcagaaatggaaagtgaacccgagttatcacaagctgagaagcag
aagctgtccatccaggaagtgagacgcagcctccccatctttccttaccgagaagatctc
ctcgctgccatcagggaccaccagatgttggtcatagagggtgaaaccggatctggcaag
accacccagatccctcagtatctcctggaagatgggtacactaacggaggaatgaagatt
ggctgtactcaacctcgaagagtggcggccatgtctgtagcagccagagtcgcacaggaa
atgaacgtcaaattaggaaatgaggtgggctacagcatccgttttgaagactgtacgtca
gaacgcacgatcctgaagtacatgactgacggcatgttactcagagagtttcttacagag
cccgacctcgccagctacagtgtgatcatcatcgatgaggcccacgagcgaaccttgcac
acagacatcctcttcggtctaatcaaagacattgcacgtttccgccctgatctgaaggtt
ctggtggccagcgccactctggacactgagcgcttctcctgcttctttgatgacgcacca
gtatttaggattccaggtcgtaggtttcccgtggatatctactacacgaaggctccggag
gccgactacctggaagcatgtgttgtgtcagtgctacagatccatgtcactcagccgcca
ggagacgtactggtgttcctcacaggacaggaggagattgaagcatgctgtgaacttcta
caggagagatgtaggagactgggctcgaagatatctgaactcattgttctgcccatctat
gccaacttgccttcagacatgcaggccaagatcttcaatcccactccgcctggagcacgc
aaagtcgtggtggccacaaatatcgcagagacgtctctcaccatcgacggcatcatctac
gtcattgatccaggtttctgcaaacaaaagagctacaacgcaagaacaggaatggaatct
cttattgtcactccctgttcacgagcatctgccaatcagagagcaggtcgtgcaggaaga
gtggctgctgggaaatgttttaggctgtacaccgcctgggcatttaaacatgagatggaa
gagacctccatccctgagatccagagaacaaacttgggcaatgtggttctgctgctcaaa
agtctcggcataaatgacctgattcatttcgacttcatggatcctcctcctcacgaaaca
ctggtgttggcgctggagcagctttatgccttgggcgcccttaaccacctcggtgaactc
actaagctcggccgaaggatggctgaacttcctgtggaccccatgctgagtaaaatggtc
ctggcttctgaacattataagtgctctgaggagattctaaccatagcggccatgctgtcg
gtgaacaactccatcttctaccgccccaaggacaaggtggttcatgccgacaacgctcga
atgaatttcgttgtaccaggaggagatcacatggtgttgctcaatgtatatacacagtgg
gtagagagcggttactccactcagtggtgcttcgagaacttcatccagtttcgctccatg
aagagagctcgagatgtccgtgatcagctggaggggttgatggacaggatcgaagtggaa
ctgtccagctgcagcggtgacagtgtgcccattcgcaaggcggtgactgcgggatatttc
taccacacggcacgcttgagtaaagggggatataaaacagtcaaacaccagcagactgtt
ttcgtccatcccaacagctcactcttcgaggaacagccacgttggatgatctaccacgag
ctggtcttcaccaccaaagagttcatgagacaggtgatcgagattgaaagtggctggctg
ttggaagtggctcctcattattataagaacaaagaactggaggacagcagcagtaagaag
atgccccgcaaacaaggcaaagcccgtgaagagctgggctga
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integrated database retrieval system
