Carassius gibelio (silver crucian carp): 127972637
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Entry
127972637 CDS
T08819
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127972637
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127972637
09142 Cell motility
04820 Cytoskeleton in muscle cells
127972637
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
127972637
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
127972637
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127972637
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127972637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127972637
NCBI-ProteinID:
XP_052432263
LinkDB
All DBs
Position
B15:6961015..7014328
Genome browser
AA seq
1665 aa
AA seq
DB search
MTRPRRITSTSLLLLRRLFLALMTIHTALGGDKTERCDGRDCSVCQCFPPKGERGNPGVL
GPQGMQGLPGLPGPQGLNGEKGQRGLIGMPGLSGPKGDQGFQGDQGYAGLDGVPGHPGPG
GLPGLPGKDGCNGTRGQRGLNGETGQPGFPGPMGLPGLKGVKGDPFTRIRFLPGTPGADG
LRGIHGPEGLKGVTGPQGPPGRMGSDGYMGLQGIPGQRGLPGDPGRSLPGPKGVEGEQGE
QGEPGPFEYVEPNPEDYVKGEKGRKGQKGICGPPGPKGFEGLPAEKGEKGIIGLPGNRGP
PGYPGIIGFPGLKGALGENGLPGLYGNPGSQGYPGDPGPKGNPKTYYNNMIGLPGDRGIP
GLAGPPGNRGSMGIPGPPGDPGASIIGSVGESGLHGLNGFKGEKGDPGKIYGSYLNYGEP
GKPGPPGSKGQTGIPGNPGYYCLPGERGDPGQVGKRGPPGIKGVWGRKGPDGGCACDPLG
DLPGDPGPPGPQGITGDPGQKGFRGPPGDIGPIGEMGGRGATGPRGFTGVRGLKGEKGEF
RMISIKGDKGDTGSVGPFGKPGFNGRKGADGKMGAPGDPGSLGDSVIGPLGDRGCPGTAG
VKGHMGPTGPPGPNMMGSVGQRGEPGEAGPQGQMGPPGSKGVQGDTLPSAPAIPGPPGSK
GMPGCKGEIGKLGNPGCIGQIGPDGPKGEIGDPGTSGLAGLQGPVGLLGDPGETGPDGIS
SSGSPGTPGNRGPQGLKGSLGNSIIGAPGPKGPSGIQGYQGPKGVPGPPGPNGFQGASGV
HGLPGRKGEKGKDGTPGAPGYPGVRPERCDKGQAGPPGKPGPPGFTGLRGCPGEKGPPGV
VGFQGIGVKGECGKPGIPGCQGRAGLQGPSGLKGDSGNPGGPGAKGLPGFPGQDGYPGNK
GKTGPLGAPGPKGFRGLNGYPGFPGFNGTKGQKGCSGPPGSLGEMISVPVKGKLGSPGPN
GESGVIGERGNKGEPGPPGQPGYPGRNGHSGYESGQRGPPGFPGLSGQPGVQGQRGPRGI
AGAPGYNGDPGDPGMTGLAGTPGFPGFDGPKGDKGESIFWQGPAGEIGPCGERGVSAPPG
EKGDWGDPGPPGPRGNCGPPGPPGNNGLAGRPGVVGPPGPCGRHGPEGPPGPPGKLGPKG
NPGSTGLGGPPGPPGLHGLDGLKGDKGEMGYRGEDLSGYRGNIGPSGDKGTPGDPGLQGP
SQTGVRGPKGQCGSQGDPGQMGPVGFRGEECKIPKPGPSGERGYAGTDGPPGLKGETGEA
GSVFTVCGDFGEPGFPGSPGYKGEKGIHGPSGLPGSDGLEGPKGESGQSGLLGLPGPSGP
IGDCGPPGLWGAKGDKGVPGPKGEPGAVKLPSSRPPSPGPKGALGAPGPAGDVGDHGPNG
SGGLKGIKGQKGDIGFPGPTGTEGPVGELGSPGVSGDKGERGSRGSPGPDGDQGPPGTSS
AGFLLVKHSQSEEVPTCPEGLRALWNGYSLLYLEGQERAHTQDLGQAGSCLRMFSTMPFS
CCNMNKCDYASRNDKSYWLSTTASIPMNSILRGMEIKEHISRCVVCEASSPTITLHSQNE
TKPICPSDWSTLWSGYSFLMHTGSGDEGGGQSLSSTGSCLSNFRSQPFVECQGSYGTCQY
SPTFFSYWLTRENMHHKVPQGTVINGQNQRNSISSCSVCMKTTPL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccgccggatcacttcaaccagcctccttctcctcaggaggctttttttg
gcacttatgacgatacacacagctttggggggagacaagacagaaaggtgtgatgggcga
gactgcagtgtctgccagtgtttcccccccaaaggagagagggggaatcctggtgtgtta
ggtccgcagggcatgcaggggcttccaggtttgcctggcccccaaggacttaatggcgaa
aagggtcagcgtggactcataggcatgcctggactctctggcccaaaaggagaccaaggc
tttcaaggagatcaaggctatgctggattagatggagtgcctggtcatccagggcctggt
ggtcttccagggcttccagggaaggatggctgtaatggaaccagggggcagcgtgggttg
aatggtgagacaggacagcctggcttcccgggaccaatgggactacctgggttaaaagga
gtcaaaggagacccgtttacaaggatacggttccttcctggaacacctggtgccgatgga
ctacgtggaatacatggaccagaagggctaaaaggggtcactggcccacaaggtccacca
ggacgaatggggtctgatgggtatatgggcttacaaggaataccaggtcaaagaggccta
ccaggagacccaggaagatcactgcctggaccaaaaggagttgagggggaacagggggaa
cagggtgaaccaggtccttttgaatatgtggagcccaacccagaagactatgtaaaaggc
gaaaaggggaggaaaggtcagaaaggaatttgtggaccacctggcccaaagggttttgaa
gggcttccagctgaaaaaggagagaaaggcataattggtttacctggtaacagaggccca
cctggatatccaggaataattggctttccaggacttaagggggcactaggggaaaatggt
ctccctggtctatatggcaacccagggtcacagggctacccaggagaccccggacctaaa
ggaaacccaaaaacctattacaacaatatgattggactacctggagatcgtggaattcct
ggtttagctggacctcctgggaatagagggtcaatgggtatacctggaccccctggtgat
cctggagcatctataataggttcagtgggggaatctggtttgcatggtcttaatggtttc
aaaggagaaaaaggtgacccaggaaaaatatatgggtcatacttaaactatggggaacct
ggaaaacctggccctcctggatccaaaggacagacaggaattcctggtaatcctggttac
tattgcctgcctggagagcgtggagatcccgggcaggttgggaaaagagggcctcctgga
ataaaaggtgtttgggggagaaaaggtcctgatgggggatgtgcatgtgacccccttggt
gatctacctggcgatcctggccccccaggtcctcagggtatcactggtgatccagggcaa
aaagggttccggggtcctcctggtgatatcggacccatcggagagatgggtgggagaggt
gcaactggtcccagaggcttcacaggtgtcagagggcttaaaggagagaaaggagaattt
aggatgatcagcataaagggggacaaaggtgacacgggatctgttggaccatttggaaaa
ccagggtttaatgggaggaaaggtgctgatgggaagatgggtgcccctggagatcctgga
tctctgggagatagtgttattggtccgctgggtgaccgagggtgtccaggaactgctggt
gtaaaaggccacatgggtccaactggtcctcctggcccgaatatgatggggtcagttggg
caacggggggaaccaggggaagcaggacctcaaggccagatgggaccccctggttctaaa
ggtgttcaaggtgataccctgccctctgcacctgccatacctggaccccccggttctaaa
ggaatgccaggttgtaaaggtgagataggtaagcttggaaatccaggatgcataggacaa
attggaccagatggtcccaagggagagattggagaccctggcactagtgggttggcagga
cttcaaggtccggttggattattaggagatccaggtgagactggcccagatggaatcagt
tctagtggctcacctggcacacctggtaatcgtggaccccaaggtctgaaagggtcttta
ggaaactctattataggggccccaggaccgaaggggccaagtgggattcagggatatcag
ggccctaaaggtgtccctggaccacctggaccaaatggattccaaggtgcatctggagtt
catggacttcctggtagaaaaggggaaaaaggaaaggatggtacaccaggagcacctggt
tacccaggtgtgagaccagagcggtgtgacaaaggacaagctggtccacctggcaaacca
ggaccaccaggcttcactggactgagaggctgccctggtgagaaaggaccccctggggtg
gtgggatttcaaggcattggagtcaaaggagaatgtggcaagcctggtatcccaggctgt
cagggacgcgcaggccttcagggaccttcaggactcaaaggggacagtggaaaccctgga
ggccctggagcaaagggtttgcctggatttcctggccaagatggctatcctggcaacaaa
gggaagaccggccctttgggggctcctggaccaaaaggttttaggggtctcaatggatat
ccaggtttcccagggttcaacggaaccaagggccagaaaggatgcagtgggcctccagga
tctctgggagagatgatttcagtgccagtgaagggcaaactagggtcacctggacctaat
ggggagagtggggtcattggagaaaggggtaataagggtgagccagggccgcctggacaa
ccagggtatcccggacgtaatggacattcagggtatgagagtggccagcgtggaccacca
ggctttccggggttgtccggccagcctggtgtccaagggcaacgtgggccaaggggaatt
gcaggagctcctgggtataatggtgatccgggtgatcctggaatgactggtctggcagga
acccctggtttccctgggtttgatggtcctaaaggtgacaaaggtgaatctattttttgg
caaggaccagcaggtgagatagggccatgtggagaaagaggagtgtcagctccccctggt
gaaaaaggagactggggtgaccctggcccacccgggcctaggggaaactgtggtccacct
ggaccacctgggaacaatggcctggctggacgtccaggagtggttgggcccccaggtcca
tgtggaagacatggtccagaaggtcctccggggcctccaggtaaactgggccctaaagga
aacccaggatccactggccttggaggacctccggggcccccagggctccatggacttgat
ggcctgaagggggacaagggtgaaatgggatatcgaggagaggatttaagtgggtatagg
ggcaatataggaccatctggagacaagggcactccaggagacccaggtttacaaggtcca
tcacaaacaggtgtccgaggtccaaaaggacagtgtggaagccaaggagaccctggtcaa
atgggtcctgtaggctttcgtggtgaagaatgtaagattcctaaacctggacccagtgga
gaacggggatacgctgggacagatggacctccagggctcaagggagagacaggagaggca
ggcagtgtgttcacagtgtgtggtgattttggtgaaccaggttttcctggttcgccaggg
tataaaggagaaaaaggaatccatgggcccagtggcctcccagggtctgacggcctagaa
ggtccaaaaggtgaaagtggacaaagtggacttttgggccttccgggaccctctggcccc
ataggagattgtggaccccctggtctttggggcgcaaaaggagacaaaggggtcccaggg
ccaaaaggagagcctggggctgtcaaacttccttcttctcgtcccccttctcctggacct
aagggtgctcttggtgcacctggcccagctggggatgttggtgatcatggacctaatggc
tctgggggtctgaaaggtataaagggacaaaaaggagatattggattccctggacctact
gggacagaaggaccagttggagaacttggaagccctggagtgtctggcgacaaaggagaa
aggggcagtcggggatccccagggccagatggtgatcagggtccccctggcacatcatct
gccggctttcttttggtgaagcacagccagtctgaggaagtgcccacttgtcctgagggc
ttaagagcgttatggaatggctacagcctgctatatctggagggtcaagagagagcacac
acacaagacctgggccaggcaggttcatgtctgcgtatgttcagcaccatgccattctcc
tgctgtaatatgaacaagtgtgattatgccagtcgcaatgacaaatcctattggctctct
acaactgcctcaattccaatgaattccattctgaggggaatggaaattaaagaacacatc
agcagatgtgtggtgtgtgaggcgtcatcgccaaccattacattacacagtcaaaacgaa
actaaaccaatctgtccttctgattggagcacactatggtctggatattcattcctcatg
catacaggatcaggggacgagggaggtggacagtctctgtcatcaacaggaagctgtttg
tcgaacttccgcagccagccgttcgtggagtgccaaggttcgtatggcacatgccagtat
tcccccaccttcttcagttactggctgactagagagaacatgcaccacaaggttccccaa
ggtactgtgatcaacggacagaaccagcgcaacagcatcagctcatgcagcgtctgcatg
aagacgacgccgttataa
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