Carassius gibelio (silver crucian carp): 127972637
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Entry
127972637 CDS
T08819
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04382
Cornified envelope formation
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127972637
04518 Integrin signaling
127972637
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127972637
09142 Cell motility
04820 Cytoskeleton in muscle cells
127972637
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127972637
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
127972637
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
127972637
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127972637
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127972637
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127972637
NCBI-ProteinID:
XP_052432263
LinkDB
All DBs
Position
B15
Genome browser
AA seq
1665 aa
AA seq
DB search
MTRPRRITSTSLLLLRRLFLALMTIHTALGGDKTERCDGRDCSVCQCFPPKGERGNPGVL
GPQGMQGLPGLPGPQGLNGEKGQRGLIGMPGLSGPKGDQGFQGDQGYAGLDGVPGHPGPG
GLPGLPGKDGCNGTRGQRGLNGETGQPGFPGPMGLPGLKGVKGDPFTRIRFLPGTPGADG
LRGIHGPEGLKGVTGPQGPPGRMGSDGYMGLQGIPGQRGLPGDPGRSLPGPKGVEGEQGE
QGEPGPFEYVEPNPEDYVKGEKGRKGQKGICGPPGPKGFEGLPAEKGEKGIIGLPGNRGP
PGYPGIIGFPGLKGALGENGLPGLYGNPGSQGYPGDPGPKGNPKTYYNNMIGLPGDRGIP
GLAGPPGNRGSMGIPGPPGDPGASIIGSVGESGLHGLNGFKGEKGDPGKIYGSYLNYGEP
GKPGPPGSKGQTGIPGNPGYYCLPGERGDPGQVGKRGPPGIKGVWGRKGPDGGCACDPLG
DLPGDPGPPGPQGITGDPGQKGFRGPPGDIGPIGEMGGRGATGPRGFTGVRGLKGEKGEF
RMISIKGDKGDTGSVGPFGKPGFNGRKGADGKMGAPGDPGSLGDSVIGPLGDRGCPGTAG
VKGHMGPTGPPGPNMMGSVGQRGEPGEAGPQGQMGPPGSKGVQGDTLPSAPAIPGPPGSK
GMPGCKGEIGKLGNPGCIGQIGPDGPKGEIGDPGTSGLAGLQGPVGLLGDPGETGPDGIS
SSGSPGTPGNRGPQGLKGSLGNSIIGAPGPKGPSGIQGYQGPKGVPGPPGPNGFQGASGV
HGLPGRKGEKGKDGTPGAPGYPGVRPERCDKGQAGPPGKPGPPGFTGLRGCPGEKGPPGV
VGFQGIGVKGECGKPGIPGCQGRAGLQGPSGLKGDSGNPGGPGAKGLPGFPGQDGYPGNK
GKTGPLGAPGPKGFRGLNGYPGFPGFNGTKGQKGCSGPPGSLGEMISVPVKGKLGSPGPN
GESGVIGERGNKGEPGPPGQPGYPGRNGHSGYESGQRGPPGFPGLSGQPGVQGQRGPRGI
AGAPGYNGDPGDPGMTGLAGTPGFPGFDGPKGDKGESIFWQGPAGEIGPCGERGVSAPPG
EKGDWGDPGPPGPRGNCGPPGPPGNNGLAGRPGVVGPPGPCGRHGPEGPPGPPGKLGPKG
NPGSTGLGGPPGPPGLHGLDGLKGDKGEMGYRGEDLSGYRGNIGPSGDKGTPGDPGLQGP
SQTGVRGPKGQCGSQGDPGQMGPVGFRGEECKIPKPGPSGERGYAGTDGPPGLKGETGEA
GSVFTVCGDFGEPGFPGSPGYKGEKGIHGPSGLPGSDGLEGPKGESGQSGLLGLPGPSGP
IGDCGPPGLWGAKGDKGVPGPKGEPGAVKLPSSRPPSPGPKGALGAPGPAGDVGDHGPNG
SGGLKGIKGQKGDIGFPGPTGTEGPVGELGSPGVSGDKGERGSRGSPGPDGDQGPPGTSS
AGFLLVKHSQSEEVPTCPEGLRALWNGYSLLYLEGQERAHTQDLGQAGSCLRMFSTMPFS
CCNMNKCDYASRNDKSYWLSTTASIPMNSILRGMEIKEHISRCVVCEASSPTITLHSQNE
TKPICPSDWSTLWSGYSFLMHTGSGDEGGGQSLSSTGSCLSNFRSQPFVECQGSYGTCQY
SPTFFSYWLTRENMHHKVPQGTVINGQNQRNSISSCSVCMKTTPL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccgccggatcacttcaaccagcctccttctcctcaggaggctttttttg
gcacttatgacgatacacacagctttggggggagacaagacagaaaggtgtgatgggcga
gactgcagtgtctgccagtgtttcccccccaaaggagagagggggaatcctggtgtgtta
ggtccgcagggcatgcaggggcttccaggtttgcctggcccccaaggacttaatggcgaa
aagggtcagcgtggactcataggcatgcctggactctctggcccaaaaggagaccaaggc
tttcaaggagatcaaggctatgctggattagatggagtgcctggtcatccagggcctggt
ggtcttccagggcttccagggaaggatggctgtaatggaaccagggggcagcgtgggttg
aatggtgagacaggacagcctggcttcccgggaccaatgggactacctgggttaaaagga
gtcaaaggagacccgtttacaaggatacggttccttcctggaacacctggtgccgatgga
ctacgtggaatacatggaccagaagggctaaaaggggtcactggcccacaaggtccacca
ggacgaatggggtctgatgggtatatgggcttacaaggaataccaggtcaaagaggccta
ccaggagacccaggaagatcactgcctggaccaaaaggagttgagggggaacagggggaa
cagggtgaaccaggtccttttgaatatgtggagcccaacccagaagactatgtaaaaggc
gaaaaggggaggaaaggtcagaaaggaatttgtggaccacctggcccaaagggttttgaa
gggcttccagctgaaaaaggagagaaaggcataattggtttacctggtaacagaggccca
cctggatatccaggaataattggctttccaggacttaagggggcactaggggaaaatggt
ctccctggtctatatggcaacccagggtcacagggctacccaggagaccccggacctaaa
ggaaacccaaaaacctattacaacaatatgattggactacctggagatcgtggaattcct
ggtttagctggacctcctgggaatagagggtcaatgggtatacctggaccccctggtgat
cctggagcatctataataggttcagtgggggaatctggtttgcatggtcttaatggtttc
aaaggagaaaaaggtgacccaggaaaaatatatgggtcatacttaaactatggggaacct
ggaaaacctggccctcctggatccaaaggacagacaggaattcctggtaatcctggttac
tattgcctgcctggagagcgtggagatcccgggcaggttgggaaaagagggcctcctgga
ataaaaggtgtttgggggagaaaaggtcctgatgggggatgtgcatgtgacccccttggt
gatctacctggcgatcctggccccccaggtcctcagggtatcactggtgatccagggcaa
aaagggttccggggtcctcctggtgatatcggacccatcggagagatgggtgggagaggt
gcaactggtcccagaggcttcacaggtgtcagagggcttaaaggagagaaaggagaattt
aggatgatcagcataaagggggacaaaggtgacacgggatctgttggaccatttggaaaa
ccagggtttaatgggaggaaaggtgctgatgggaagatgggtgcccctggagatcctgga
tctctgggagatagtgttattggtccgctgggtgaccgagggtgtccaggaactgctggt
gtaaaaggccacatgggtccaactggtcctcctggcccgaatatgatggggtcagttggg
caacggggggaaccaggggaagcaggacctcaaggccagatgggaccccctggttctaaa
ggtgttcaaggtgataccctgccctctgcacctgccatacctggaccccccggttctaaa
ggaatgccaggttgtaaaggtgagataggtaagcttggaaatccaggatgcataggacaa
attggaccagatggtcccaagggagagattggagaccctggcactagtgggttggcagga
cttcaaggtccggttggattattaggagatccaggtgagactggcccagatggaatcagt
tctagtggctcacctggcacacctggtaatcgtggaccccaaggtctgaaagggtcttta
ggaaactctattataggggccccaggaccgaaggggccaagtgggattcagggatatcag
ggccctaaaggtgtccctggaccacctggaccaaatggattccaaggtgcatctggagtt
catggacttcctggtagaaaaggggaaaaaggaaaggatggtacaccaggagcacctggt
tacccaggtgtgagaccagagcggtgtgacaaaggacaagctggtccacctggcaaacca
ggaccaccaggcttcactggactgagaggctgccctggtgagaaaggaccccctggggtg
gtgggatttcaaggcattggagtcaaaggagaatgtggcaagcctggtatcccaggctgt
cagggacgcgcaggccttcagggaccttcaggactcaaaggggacagtggaaaccctgga
ggccctggagcaaagggtttgcctggatttcctggccaagatggctatcctggcaacaaa
gggaagaccggccctttgggggctcctggaccaaaaggttttaggggtctcaatggatat
ccaggtttcccagggttcaacggaaccaagggccagaaaggatgcagtgggcctccagga
tctctgggagagatgatttcagtgccagtgaagggcaaactagggtcacctggacctaat
ggggagagtggggtcattggagaaaggggtaataagggtgagccagggccgcctggacaa
ccagggtatcccggacgtaatggacattcagggtatgagagtggccagcgtggaccacca
ggctttccggggttgtccggccagcctggtgtccaagggcaacgtgggccaaggggaatt
gcaggagctcctgggtataatggtgatccgggtgatcctggaatgactggtctggcagga
acccctggtttccctgggtttgatggtcctaaaggtgacaaaggtgaatctattttttgg
caaggaccagcaggtgagatagggccatgtggagaaagaggagtgtcagctccccctggt
gaaaaaggagactggggtgaccctggcccacccgggcctaggggaaactgtggtccacct
ggaccacctgggaacaatggcctggctggacgtccaggagtggttgggcccccaggtcca
tgtggaagacatggtccagaaggtcctccggggcctccaggtaaactgggccctaaagga
aacccaggatccactggccttggaggacctccggggcccccagggctccatggacttgat
ggcctgaagggggacaagggtgaaatgggatatcgaggagaggatttaagtgggtatagg
ggcaatataggaccatctggagacaagggcactccaggagacccaggtttacaaggtcca
tcacaaacaggtgtccgaggtccaaaaggacagtgtggaagccaaggagaccctggtcaa
atgggtcctgtaggctttcgtggtgaagaatgtaagattcctaaacctggacccagtgga
gaacggggatacgctgggacagatggacctccagggctcaagggagagacaggagaggca
ggcagtgtgttcacagtgtgtggtgattttggtgaaccaggttttcctggttcgccaggg
tataaaggagaaaaaggaatccatgggcccagtggcctcccagggtctgacggcctagaa
ggtccaaaaggtgaaagtggacaaagtggacttttgggccttccgggaccctctggcccc
ataggagattgtggaccccctggtctttggggcgcaaaaggagacaaaggggtcccaggg
ccaaaaggagagcctggggctgtcaaacttccttcttctcgtcccccttctcctggacct
aagggtgctcttggtgcacctggcccagctggggatgttggtgatcatggacctaatggc
tctgggggtctgaaaggtataaagggacaaaaaggagatattggattccctggacctact
gggacagaaggaccagttggagaacttggaagccctggagtgtctggcgacaaaggagaa
aggggcagtcggggatccccagggccagatggtgatcagggtccccctggcacatcatct
gccggctttcttttggtgaagcacagccagtctgaggaagtgcccacttgtcctgagggc
ttaagagcgttatggaatggctacagcctgctatatctggagggtcaagagagagcacac
acacaagacctgggccaggcaggttcatgtctgcgtatgttcagcaccatgccattctcc
tgctgtaatatgaacaagtgtgattatgccagtcgcaatgacaaatcctattggctctct
acaactgcctcaattccaatgaattccattctgaggggaatggaaattaaagaacacatc
agcagatgtgtggtgtgtgaggcgtcatcgccaaccattacattacacagtcaaaacgaa
actaaaccaatctgtccttctgattggagcacactatggtctggatattcattcctcatg
catacaggatcaggggacgagggaggtggacagtctctgtcatcaacaggaagctgtttg
tcgaacttccgcagccagccgttcgtggagtgccaaggttcgtatggcacatgccagtat
tcccccaccttcttcagttactggctgactagagagaacatgcaccacaaggttccccaa
ggtactgtgatcaacggacagaaccagcgcaacagcatcagctcatgcagcgtctgcatg
aagacgacgccgttataa
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