Carassius gibelio (silver crucian carp): 127972948
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Entry
127972948 CDS
T08819
Name
(RefSeq) SR-related and CTD-associated factor 4-like isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127972948
03041 Spliceosome [BR:
cgib03041
]
127972948
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127972948
Spliceosome [BR:
cgib03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
127972948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
127972948
NCBI-ProteinID:
XP_052432930
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All DBs
Position
B15:complement(3951855..3985554)
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AA seq
823 aa
AA seq
DB search
MDMEAVNAFNGEMLSMMDMTPPISRAKMMSVTKAGIKAIKLYKHVVQIVEKFIKRCKPDL
KVAGLYVVDSIIRQSRHQFGTDKDVFGPRFLKNFMVTFQNLFQCPADDKGKILRVLNLWE
KNDVFSMDIIQPLLNMATASDLPVVENGITATAPPAMPVPVETAVPEPAPAPAPAVETPA
VLPSFQNPVALTAVAQLLQGTGGIELQQLIQTLQQAGGVGLPQSTAPPPEQKPSLAKSLL
DRFDYDDDPEPEPVEEKTEPPPTAPITINLPPELQQALQAHLLSQIANQTQMQGQMVSQG
QVPYQDQMAPQEFPAMVQTQIPDNIPQGFDESVIQPGITHQASAENERSVRDDGRDRRHS
RRTRSRSPQRLSSSRSGRSRSGSRSRRERSRYHRTRSRSRERRGRSPQARSEERRDRERD
REKERERRQKGLPSIKKETLSVCSTTLWIGQLDKKTQQQDIMSLMEEFGQIESINMIPPR
GCAYIVMVHRQDAYTALNKLSRGVVKVNQKTIKIAWALNKGIKTDLKKFWDVERGVTYIP
WDKVKADDIRSLQEGGLLDVETLKPEWKSVVANPAVPVTEGPEGKQEEGAALPAVSQSPS
VQPVAMMNVVPGPPANMRLPPPAMITGAFPPPGFNPPQMPAGFAPAVPVTSLNPAGPPPS
LTVSETAIEEPSDESYEAPKSHMDLTGAQALSPPPHGGILGPRPGPLPPHAPVGLRPPFM
PPFANNGPRSTLPPPNMPPQMMPPRGPNPMFGEPPVGRFRMRMMGPPRHEFPRHRLPVGP
RGEEPHWRDQGPERGPDRFGNEPPFHRGGWGRGGPRGRSRFGN
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaagcggtgaacgcctttaacggggagatgctgtccatgatggacatgact
cccccgatctctcgagccaaaatgatgtctgtaacaaaagcgggaatcaaagctattaag
ctttacaagcacgttgttcagatcgtggagaagttcatcaagaggtgtaaaccagatcta
aaggttgctggtctctatgtggtcgactcaattatccgacagtcgcgtcatcagttcggc
acagacaaagatgtgttcggtccgaggtttttgaaaaacttcatggttacatttcagaac
cttttccagtgcccagctgatgataaggggaagatattgcgtgtgttgaatctgtgggag
aagaatgacgtgttcagcatggacatcattcagccgctgttaaacatggccacagcttct
gatctacctgttgtggagaatggaatcacagccaccgctcctccagccatgccagtgcca
gtggaaacagcagtgccagagccagcacctgcaccagctccagcggttgagacgccagca
gtcctgccctcttttcagaacccagtggccctaactgcagtcgcccagctcctccagggc
acagggggcatcgagttacagcagctgatccaaactctccagcaggccggaggggtgggg
cttccacagtccactgccccgccccctgagcagaaaccatcactagctaagtctctgctg
gatcgatttgattatgacgatgaccctgaacctgaacctgtggaggaaaagactgaacca
cctcctactgctcccattaccataaacctcccaccagaattacagcaagccctgcaagct
catcttctaagccaaattgctaaccagacacagatgcagggtcagatggtgtcacagggt
caagtgccgtaccaggatcagatggcacctcaggagttcccagcaatggttcagacccaa
ataccagataatattcctcaaggctttgatgagagtgtcatacagcccggtataacccac
caggcttcagctgagaatgaacgctcggtgagagatgatgggagagatcgaagacacagc
agacggacgagatcaaggtctccacagagactgtcgtcatcacgctctggaagatcgcgg
tccggttcacgttcccgccgagaacggtcgaggtatcaccgcacgcgttcccgatccaga
gagcggcgaggccgttccccacaggcgcgatcagaggagaggagagaccgggagagagac
cgggagaaagagcgagagcggcgacagaaaggacttccgtctatcaagaaggaaactctt
agtgtgtgcagtactacattatggatcggacagctggacaaaaagactcagcagcaggac
atcatgagtctgatggaggagtttggacagatcgagtccatcaacatgattcctcccaga
ggttgtgcctacattgtcatggtgcacagacaagatgcctacacagccctgaataaactc
agcagaggggttgttaaagtcaaccagaaaactataaagatcgcatgggcattgaataag
ggcataaagacggacttgaagaagttttgggatgtggagcggggtgtcacgtatatccca
tgggataaagtgaaagccgatgatattcgaagtcttcaagaaggaggcttgcttgatgtt
gaaacactcaaaccagagtggaaaagtgttgtggccaatccggctgtgccagtaacagaa
ggacctgaaggaaaacaggaagagggagctgcactaccagcagtatcacagagcccctca
gttcaacctgttgctatgatgaatgtcgtcccaggaccccctgctaacatgagactccca
cctccagccatgatcacaggagccttccctcctcctgggtttaaccccccacagatgcct
gcaggattcgctcctgccgtcccggtgacctctctgaaccccgcaggtcctcctccatcc
ctcacagtatcagaaaccgcaatcgaagaaccttcagatgaatcttacgaggctcccaag
agtcacatggacctgacaggagctcaagcgctcagtccaccgcctcatggggggattctg
gggcccagaccgggacccctaccgccacacgcccctgtgggactccgcccacccttcatg
cctcccttcgctaataatggcccccgttccaccctgccccctcccaatatgccccctcaa
atgatgccccctaggggccccaaccccatgttcggagaaccccctgtgggtcgattccgg
atgcgcatgatgggtcctccaagacacgagttcccccgtcacaggctcccagtgggtcct
agaggagaggaaccgcactggcgagatcaaggtcctgaaaggggcccggacagattcgga
aacgagccaccgtttcatcggggtggatggggaaggggcggccctcgcggacgaagtcgg
tttggaaactga
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