Carassius gibelio (silver crucian carp): 127974270
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Entry
127974270 CDS
T08819
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
127974270
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Others
127974270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_VIN3
Fn3_ROS1
DUF4998
Ig_ANOS1
VWA_3
Motif
Other DBs
NCBI-GeneID:
127974270
NCBI-ProteinID:
XP_052433399
LinkDB
All DBs
Position
B16
Genome browser
AA seq
1882 aa
AA seq
DB search
MRVSGSRIKLWCPLISLALIQFLAPVSAQVPGPRRLRFKVLSEGRLLVSWKEPKGEYEGY
RFTYNSEPGGETTELQIARGENKAIIKDFNPRKEYSVKVIAVSGNLRSRALQGKYTAEDQ
SSDRDTTQPQRQKEPGPVDEGNEISGADQFVCTTSAIADIVILVDGSWSIGRINFHLVRV
FLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDAVKNLPYKGGNTLTGL
ALTYILENSFKPESGARSDVPKIGILITDGKSQDDVIPPAQTLRSAGVELFAIGVKNADE
NELKAIASEPEETHVYNVADFSIMSTIVAGLTKKVCDGVEQQDKDIKRDSPTEETPSPPQ
DLVTSEVTAHSFRVSWTHASGSVEKYRVVYQPIGADVLDEIVVGGTENSVVLQNLNSLTE
YEIAVFAVYRSAASDALRGNEITLALPTVSDLEVYDVTDNSMRARWRDAEGASGYMILYA
PLSRETTDERELTVDESVTDVGLTGMIPDTEYTVTVYALFREETSDPVTIQETTMSLRPP
RNLRVTEVDHSSVRLNWDAVSRKVKGYRVVYTKTDSVQTSQVDMVPVTNVYLKNLSPLTE
YTVEVFALYDAGQSEALSGRFNTKLVPAPFRLMTSEVTSESFRVSWSHPARDVVLYKMAW
SPTEGGQEMEIMLNGAEDSYVIQDLSPFTEYKVSLSAIYKDEMESSPALVLEKTLDWTTE
APTTFPSTTAFVRLGVSNLWVDEETPFSLQVNWEVLDSDVEQYKVTYVNADHTEETVLVS
GNRRSVILQPLLSDTRYKITVTPIYADGESTALSKVSTGKTLPLSGPSNLRVSDEWYNHL
RISWDGPQFPTLGYRVIYQPISVSGPALETFVGDDVNTLLFLNLLSDTEYSVQVIASYTT
GSSQPLTGKGKTLFLGVTNLSTYKVLSSSLCAQWQPHRHASVYRVVIESLLNGQKQEVRV
DGGESRECFFNLTPNTQYKISVYTLLMDTEGSVVTTMATTAPAPTQPPTAPPTTIPPPTI
PPAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVAIVQFSD
DARTEFKLSSYSDKEVLLDAVQRITYKGGNTKTGRAIKHVKEAIFAEDAGVRRGIPKVLV
VLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFK
KIEEQLITFVCEAATATCPSMLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEPGTFNSY
PCYRLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNNEPLVGI
ILDNGGKTLTFFNYDYKGEFQTVTFEGSEIKKIFYGSFHKLHVAISKTAAKIVIDCKTVG
EKSINAAGNITIDGVEVLGRMVRSRGRRDNSAPFQLQMFDIVCSTSWASRDKCCELPGLR
VEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTETAGHSHFVSAARL
VVGLKRYGPQGPPGEIGPPGPQGPPGPQGPNGMSIQGPPGAPGEKGEKGEIGVPGPQGVP
GASGGPGRDGPPGQRGLLGKDGPQGRPGPPGPMGSPGAPGAPGPSGSPGQMGDQGTAGPP
GAKGERGERGTMQSQAAVRAIARQVCEQLIQSHLSRYSSVLNQIPSQSVSVRTVPGPPGE
PGRLGPPGPQGEQGPPGRPGFPGASGQNGRPGERGLPGERGEKGSPGIGTQGPRGPPGPP
GPPGEGRTGSQGPPGRPGIQGSSGRPGIPGSPGPAGPPGYCDQNSCVGYNVGVQQLPSDP
YQNYGPATNYNNDEEEEDPYGGYHAYPPQYYQPSYPDPRAARFGPAHPGDTVGMRSPGTG
RFSRSTAEEGSVNESEVQVKAE
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgtcgggatcgaggattaagctgtggtgtccgcttatctcgctggcactgatt
cagtttctcgcccctgtttcggctcaagttccaggtccgagaagacttcgatttaaagtc
ctgagtgaaggcaggctacttgtctcatggaaggaaccaaaaggagaatatgaaggctac
agatttacatataatagtgaaccaggtggggaaacaaccgagttgcaaattgcaagggga
gagaataaagcaataataaaggattttaatcccaggaaggagtattcagtcaaggttata
gctgtgagtggaaacctgcgcagccgagcacttcagggaaaatatactgcagaagaccag
agcagtgatagagacaccactcaacctcaaagacagaaagaaccgggacctgtggatgag
ggcaatgagatctcaggagcggatcagtttgtctgcacaacatctgccattgcggatatt
gtcatcctggtcgatggatcttggagtatcgggcgaatcaatttccatttggttcgtgtg
tttcttgaaaacctggtcaatgccttcgatgtgggaatagacaaaacccggattggactg
gcccagtacagtggcgatccacggattgagtggcacttgaatggcttcagtacaaaagat
gcagtaatagatgctgtcaaaaacctaccgtacaagggaggcaacactctcacaggtctt
gctcttacctacatcctggagaacagcttcaaacccgagtctggggctcgtagcgatgtt
cccaaaattggaattctgataaccgacggcaaatcccaggatgatgttatcccacctgct
cagaccctgagaagtgctggagtggagttgtttgccattggtgtgaagaatgctgatgag
aacgagctgaaggccatcgcctctgaaccagaggaaacacacgtttataatgtggcagac
ttcagtatcatgagcactattgtagcaggtttgaccaaaaaggtgtgcgacggagtggaa
caacaagacaaagatattaaacgagattctcccactgaagagacgccatctccaccccag
gacttggtcacttctgaggtgaccgctcacagtttccgtgtctcttggactcatgcgtct
ggcagtgtggaaaaatatcgggttgtttaccaaccaattggagcagatgttctggacgag
attgtggtgggcggcacggagaattcagtcgtcctgcagaatttgaactctctgactgaa
tacgagattgctgtgtttgctgtgtaccgcagcgcagcgagtgacgctctgagaggcaac
gagatcacacttgctcttcccacagtgagtgatctcgaggtgtacgatgtgacagacaac
agcatgagagcccgctggagggatgcagaaggggcttcggggtacatgatcctttacgct
ccactgagcagagagactacagatgaaagagagctaacggtggacgagtcggtgactgat
gtgggactgactggaatgattcctgacacagagtacaccgttacggtctatgccttgttc
agagaggagaccagtgatcccgttactattcaggagaccaccatgtccctgagacctcca
cgtaacctgcgggtcactgaagttgaccacagctctgtgcggctcaactgggacgcagtg
tccaggaaggttaagggctaccgtgtcgtgtatacgaagacagatagtgttcagaccagt
caggtggatatggttccagtcaccaatgtgtacctgaagaacctgtcacccttaacagag
tacaccgtggaagtttttgctctttacgatgctggccaatcagaggcactgagtggtaga
ttcaatacaaagcttgtgccagccccattcagactgatgacatcagaggtgacctcagag
agtttccgggtcagctggtcacatccggccagagatgtggtgctctataagatggcctgg
tcacccactgaaggaggacaagagatggagatcatgctgaatggtgctgaggactcatat
gtgattcaagacctgagtccttttacagagtataaggtgtcactctcagccatctataaa
gacgaaatggagagcagccctgcgcttgtgcttgagaaaacattggactggaccacagaa
gctcccaccacttttccctcaactacagcatttgttcgtttgggagtgagtaacctgtgg
gtggatgaggagacacctttcagtttgcaagtgaactgggaggtgctggactcagacgtg
gagcagtacaaagtgacatatgtcaatgcagaccacacagaagagacagtgttagtctcg
ggaaacagaagaagcgtgatcctgcaacctctcctctcagacacaaggtacaagatcaca
gtgacccctatctatgcagatggagagtccacagctctgtctaaggtctctaccggcaaa
acactgccactctctggacccagtaacctcagagtctctgatgaatggtataatcacctc
cgcatcagctgggacggccctcagttccccactttaggttacagagtcatctatcagccc
atttctgtgtcaggtccggctctagagacgtttgtaggggatgatgtgaacaccctgctg
ttcctcaatctgttgagtgacacggagtacagcgttcaggtcatcgcctcgtacaccacc
ggctccagccaacccctcaccggcaagggcaaaacactgttcctgggggtgacgaatctc
agcacgtacaaggtgctcagtagcagcctgtgtgcccagtggcagcctcaccgtcacgcc
agcgtctacagagtcgtcatcgagtctctgctcaacggacagaaacaggaagtgagggtc
gatggcggtgaatccagagagtgcttcttcaatcttacccccaacacccagtacaagatc
agcgtctacactctcttaatggacacagagggttctgttgtcaccaccatggcaacaacc
gctccagcacccacccagccaccgaccgcaccacccaccaccatccctcctcccaccatc
cccccagccaaagaagtttgcaaggcagccaaggcagaccttgccttccttgtagatggc
tcctggagtatcggagatgacaactttcagaagattatccgattcctgtacagcacaact
ggtgcacttgacgtgattggccccgagggaacacaggtggccattgttcagttcagtgat
gacgccagaaccgagttcaagctcagctcctacagcgataaggaggttctgctggacgcc
gtgcagcgcatcacctacaagggaggaaacaccaagacaggtcgcgccattaagcatgtg
aaggaggccatctttgccgaggacgcgggcgtaaggagaggcattcctaaagtgctggtg
gtgctcacggatgggcgatctcaagatgatgtcaacaagatctcgaaggagatgcagatg
gagggctacattatctttgccattggcttcgctgatgctgactacggggagctggtgaac
attgccagcaaaccaagcgagagacatgtgttctttgtggacgatctggatgccttcaag
aaaattgaagaacagctcataacttttgtttgtgaggctgcgactgccacttgcccctcg
atgttaatgagcgggaacactttagctggcttccgtatgatggagatgtttggtttggtg
gagaagcactacagcagcgtgcaaggtgtctcaatggagcctgggactttcaacagctac
ccctgctatcggttgcacaaggacgcgctcgtctctcagcctaccaggtatctacatccc
gaaggccttccctctgactacactatatcaatgctgttccgcatactgcctgaaactcct
caggaaccttttgcattgtgggaaatccttgacaaaaacaatgagccacttgtgggcatt
atcctggataacggagggaaaacattaacctttttcaattacgactacaagggagaattc
caaacggtgactttcgaaggaagtgaaattaagaagattttctatggcagtttccataag
cttcatgtggccatcagcaaaactgctgctaaaattgtgattgactgcaaaacggtggga
gagaaatccatcaacgccgcagggaacatcaccattgatggagtggaggttctgggacgc
atggtccgctcacgtggaaggagagataactcagcgccgtttcagctccagatgtttgac
atagtctgcagcacatcatgggccagtcgggacaagtgctgtgagctcccaggcttgaga
gtcgaagaagactgtcctgccatgccccatgcctgcacctgtgctcaggacagcaaagga
ccacctggaccctcaggaccaccgggcggtcctggtatcagaggttcaagaggagatcgg
ggggagccaggcttgacggagactgcagggcattcacactttgtttcagcagcccggctg
gtggtaggcctgaaacgttatgggcctcaagggccacctggtgagatcggacctccagga
ccgcaggggccaccgggtcctcaggggccgaatggaatgtccattcagggtccaccgggg
gctccgggtgaaaaaggagagaagggtgaaataggtgtgccgggtcctcagggtgtacca
ggtgccagtggaggaccaggccgagatggacctccaggacagagaggcctactgggtaag
gatggaccccagggaagaccgggccctccaggaccaatgggaagccccggagctcctggg
gctccaggaccgagtggatctccagggcaaatgggtgatcaggggacagctgggcctccc
ggcgccaaaggcgaacgaggagagcgaggtactatgcagtctcaggccgctgtccgtgcc
atagcgcgacaagtttgtgaacagctaattcagagtcacttgtctcgctacagctctgtt
ctgaaccagattcccagtcagtctgtttcggtacgaacagtaccaggtcccccgggtgag
cctggtcgactgggacctccgggcccacagggagaacagggacctcctggcagaccagga
ttccctggagccagtgggcaaaatggccgtccaggagagagaggtctcccaggagaaagg
ggagagaagggcagtccagggattgggacacaaggccctcgtggtcctccagggccccca
gggcctcctggagaaggtcggacaggaagtcagggccctccagggagacctggaattcaa
ggctcctcaggacgtccaggtatccctggtagccctggtcctgctggaccccccggctac
tgcgaccagaactcctgcgtcggatacaacgttggagtacaacagttaccctccgacccc
taccaaaactatggccccgccaccaactacaacaacgatgaggaggaagaggacccttac
ggtggctaccatgcctaccctcctcagtactatcaacccagctatcctgacccccgtgcc
gccaggttcggccccgcccaccctggtgacacggtggggatgaggtcacctggcactggt
cgcttctcccgcagcacggccgaagaaggcagcgtcaatgagtcagaagtgcaagtgaag
gccgaatag
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