Carassius gibelio (silver crucian carp): 127974456
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Entry
127974456 CDS
T08819
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127974456
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgib03310
]
127974456
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
127974456
Nuclear receptors [BR:
cgib03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
127974456
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CTNNB1_binding
Motif
Other DBs
NCBI-GeneID:
127974456
NCBI-ProteinID:
XP_052433661
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Position
B16:complement(12131609..12183040)
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AA seq
554 aa
AA seq
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MENDEPASPDPIHDSTQSNRGSPVHKKSHLTQIEVIPCKICGDKSSGVHYGVITCEGCKG
FFRRSQSSSVQYSCSRQSNCPIDRASRNRCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDS
LFAEVERHRQQQRLQANSVHEPQPLPAYRSSKEPREQSSHLIPPLPPAYPYSVEPELQGC
PPEMHPYLDCRIGEAQAQSLAYRGSHRRGDSNSLSAGRGYDSTRSTPEAILNMSGSEMGI
RPFDPESSFFSYPASLHIGHKLKYFDAFRELSEPPIDSKDPYMIKIQNCVLKMSEGLTVL
ERHEEELSASIVRSHRETTQYRPEELQALRWKVFSREEIHAYQSKSVDEMWQHCAVRLTD
AVQYVVEFAKRIPGFRQLCQNDQIALLKSGSMEVVLVRMSRMFNTENNTVFFDGKFAGTE
LFKSLACSDLIAAVFEFAHNLCVLRLTEQQMAVFTALVLLNAVDRPCLEDRERVQRARRD
VGLALSHILHRDNQESLQHKLFQRVQELESLCALHIEKLRWFRQLYPLTVHSLFPPLYKE
LFGSDTDTQTLTTH
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgatgagcctgcatcaccggacccgatccatgacagcactcagagtaataga
ggaagtccagtgcacaagaaatctcatctaactcagattgaggtgatcccatgtaagatc
tgtggagacaagtcatccggggttcattatggagttatcacttgtgagggctgcaagggc
ttcttccgcagaagtcagtcctccagtgtgcagtactcctgctccagacagagcaactgt
cctattgaccgcgccagccgcaaccgctgccagagctgccgtctcaaaaaatgtgtcgct
cagggaatgagccgtgatgcggtgaagtttggccggatgtctaagcgccagagagactct
ctgtttgcagaagttgagagacaccggcagcagcagcgtcttcaggccaactcagtccat
gagccccagcctcttccagcctaccgatccagcaaagagcccagagaacagtcatcacat
ctcatcccacctcttcctccagcttacccttactctgtagagcctgaactgcaaggctgc
cctccagagatgcatccatacctggattgtcgcataggcgaggcccaggctcagagtctg
gcctacaggggctcccacaggagaggtgacagcaacagcttgtcagctgggagaggatat
gactccacaaggtctacaccggaggctattctgaacatgagcggtagtgaaatgggcatt
cgtccttttgaccctgagagctcgttcttttcttaccccgcatctctacacataggacac
aaattaaaatatttcgatgccttccgagagctctctgagcctcccatagacagcaaggat
ccttacatgatcaagattcagaattgtgtcctgaagatgagtgaaggtcttacagttttg
gaacgacatgaggaggagctctctgcaagtatcgttcgttcccacagagagacgactcag
tatcgaccggaggagctgcaggctctcagatggaaggttttcagcagggaggagatccac
gcttaccagagcaaatcggtggatgagatgtggcagcactgtgcggtgcgtttgaccgat
gctgttcagtacgtggtggagtttgctaaacgtatccccggatttcgtcagctttgtcaa
aatgatcaaattgctctcctcaagagtgggtccatggaagtggttctggtccggatgagt
cggatgtttaacacagaaaacaacacagtattctttgacggcaaatttgctggaacagaa
cttttcaaatcccttgcatgtagtgatctgatagctgctgtatttgaatttgctcacaat
ctgtgtgtgctgagactgactgaacagcagatggccgtgttcactgcgctggtcctcctc
aatgcagtagatcgaccgtgtctggaggacagagaacgagtgcagagagccaggagagat
gtggggcttgccctcagtcacattctgcacagagataatcaggagagtctgcagcataag
ctgtttcaaagagtccaggagctggagtctctgtgtgcactgcacattgagaaactgcga
tggttccggcagctttaccctctcacggtgcattccctcttccctccgctatacaaagag
ctgttcggctctgacacagatacacagacactgactactcattga
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