Carassius gibelio (silver crucian carp): 127974971
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Entry
127974971 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127974971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127974971
03036 Chromosome and associated proteins [BR:
cgib03036
]
127974971
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127974971
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127974971
mRNA degradation factors
5'-3' decay
Decapping complex
127974971
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127974971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127974971
NCBI-ProteinID:
XP_052434577
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All DBs
Position
B16:complement(18358741..18365801)
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AA seq
482 aa
AA seq
DB search
MATARTEIPASVMPMSKQNGQSKPMNLQSGSLTSSQSGKTPGMSQKGSSIPQSSGGIRFG
DDWKKCLQLPPKDMRMKTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI
VLSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYVQAIVLVPTRELALQVSQISINMSK
HLGGVKVMATTGGTSLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVDKAQMIVMDEAD
KLLSQDFVVIIEDIISFLPKNRQVLLYSATFPISVQKFMSKHLQKPYEINLMDELTLKGI
TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMM
QEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYG
HLGLAINLITSEDRFNLKGIEDQLMTDIKPIPSSIDKNLYVAEFHSMNPDEEEAAHKAGE
LN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcgagaacagagatccctgcttcagtcatgccaatgagcaaacagaatgga
cagtccaagcccatgaacctccagtcaggatcgcttacttcatcacagtcaggaaaaaca
cctgggatgtcccagaaaggaagcagtataccccaaagcagtggcggtatcaggtttggt
gatgactggaagaagtgcctgcagcttccaccgaaagacatgagaatgaaaaccacagat
gtgactgcaaccaaaggaaatgagtttgaagattactgccttaagagggaactgcttatg
ggcatcttcgaaatgggctgggagaagccttcccctatccaggaggagagtattcctatt
gtcttgtcagggagggatatactcgcccgagctaaaaatggcacgggtaaaagcggagcc
tacctcatccccctcttggaaaggattgacctgaagaaagattatgttcaagccatagtg
ttggtaccaactcgtgagttggctctgcaggtgagccagataagtatcaacatgagcaag
caccttggtggcgtcaaggtcatggctacgacaggtggaactagcctgcgggatgatatt
atgcgtcttgacgagactgtacatgttataatagctaccccaggaaggatccttgacttg
ataaagaaaggtgtggccaaggttgacaaagctcaaatgattgtgatggatgaggctgat
aaattgctttctcaagactttgtggtgatcattgaggacatcatcagtttcctgcccaaa
aaccgccaggttttgctctattctgccactttccccatcagtgtgcagaagttcatgtcc
aaacaccttcagaagccatatgaaatcaatctgatggatgagctgacactgaaaggcatc
actcagtactatgcttatgtgacagaaagacagaaagtgcactgtctcaacacactgttc
tccaggctccaaatcaaccagtcaatcatcttctgtaactccacccaaagggtggaactc
cttgccaagaagatcacacaacttggctattcctgcttttatatccatgccaagatgatg
caggaatacagaaatcgtgtgttccatgacttcagaaacggactgtgtaggaacctggtc
tgcactgatcttttcacaagaggaattgacatccaggctgtcaatgtagtcatcaacttt
gacttccccaaaaatgcagagacatatctgcaccgcattggtcgatcaggtagatacggt
catctgggtctggccattaacctgatcacctcagaagatcgttttaacctaaagggcatt
gaggaccagctgatgactgacataaagcccatacccagcagcattgacaagaacctgtat
gtggcggagtttcactccatgaaccctgatgaagaagaggctgctcacaaagcaggcgag
cttaattaa
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