Carassius gibelio (silver crucian carp): 127974980
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Entry
127974980 CDS
T08819
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127974980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127974980
03032 DNA replication proteins [BR:
cgib03032
]
127974980
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127974980
mRNA cycle factors
Common to processing body (P body) and stress granule
127974980
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
127974980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
DUF1515
Motif
Other DBs
NCBI-GeneID:
127974980
NCBI-ProteinID:
XP_052434602
LinkDB
All DBs
Position
B16:27617999..27633080
Genome browser
AA seq
1102 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVETVHKLDIIISGKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQSASEEEEEHDSLCSVLPDSLIFKMAVTC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESGVPPLHTDNTGMGD
ADARDHDSVALSEERTLQNGSLEEDDEEEQKENEEGEHKGNGRTMGTKKSLEKKRSAEEV
QKQKRKLSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEEGGGPVDGLGAARVQMNTLGR
EGRRGPLPVDGSWESGSEEDEGGTAFDVETDSDMNSQESRSDLEDMEDAEHVPQQQQLQQ
EESEQPQPSREENSTPPVTNGPLVSNDASISRNLQAMSSQLFQAKRCFRLAPTFSNVLLR
PAAPANPAPDSDPAPVQEATPPAEEISRSMSPEIANGTNDNGTLLTNPDSDSEGSEHSNH
SIHSEKTLSERLEILTNQSLIQVVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLP
EGSKMLETDLGLNKHVTELLNECEQPGLVQSLLLPEDLALRHLPVLSVAHRRLDFTGQRP
PLTPLDECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDNLVQQAKAQFRM
AEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTTVLCQHLGLLRQL
AASGCFIIIIPRTVIDGLDLLKKENSGARDGIRFLETEFRKGNRYIRCQKEMGRSFERDK
LKRQDIEAWHLYKMVDSCRQLTGSQSSGDEDTAGMVTILTGHALEELTERSASMKAAVQA
VAAAGMELKNITDFYRQWKEMG
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaagacagcgagccggaggccaaagtgcttcatattaaacgactg
tacagggctgtggtggaaacggtgcacaagttggatattataatcagcggcaagtcgtca
tacagggaggtcttcaaaccggagaatatcagtttgaggaacaaattgcgggagctttgt
gtaaagctgatgttcctgcaccctgtggactacggacgcaaggcagaagagctgctttgg
aggaaggtctactatgaggtcattcaggtcatcaagaccaacaagaagcatattcacagc
cgcagtgctctggagtgcgcttacaggacccatctgatcgctggggtgggtttctttcaa
cacctgctgctctacatccagtcacactatcaactggagctacaggactgcatcgactgg
acacacgtcaccgacccactcatcggtcgtaagaaaccagtctcagccacccctaaagag
atggagtgggcccagatggcatgtcacagatgccttgtgtacttgggagatctcgcgcgg
taccaaaatgaactggcgggagtggaggcagagcagctggcggagcgcttctatcatcag
gccttgtctgttgcacctcacgtcggcatgccgtttaatcagctgggtacgcttgctgga
agtaaattttataatgtcgaggctacttactactacttgcgctgtattcagtcggagact
cccttcgatggcgcttatgggaatttaaagcgtctgtttgacaaggcagccaagatgtac
caccaggtgaagaaacaagagatgaaaaaactttcaccatcacgccagaggtcaaaagac
atcaaaagactgctggtgagcttcatgtatttgcagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacgtcgctgtgccagtctgtgctggaagactttaacctggtg
ctgttctacctcccccttcctgctcatggcagccagtcagccagcgaggaggaggaagag
cacgactcgctctgctccgtgcttcctgacagcctcatattcaagatggcggtgacttgc
cttatggtggtgcacagtttgaagagaggggcttcaaagcagtacagtgcctccattgct
ttcacgttggctctgttctcccatttggtcaatcatgtcaacattcgactgcaagctgaa
ctggaggagggagagagtggcgtcccacccctgcacactgataacactggcatgggtgac
gctgatgccagagatcatgatagtgttgctctctcagaggagagaaccctgcagaacggc
tccctagaggaagatgatgaagaagagcagaaggagaatgaggaaggtgagcataaggga
aacggaaggacaatggggacaaagaaaagcctggagaagaaaagatcagctgaggaggtg
caaaagcagaagcggaagctctcacggctctccatgctccgccgcagacgctgcgctcac
aaggaggacgagagcgacctgagcgagggatttgagagtgacgaagaggaggatgaggaa
ggtggaggtccggtcgacggtctgggagccgctagagttcagatgaacactttagggagg
gaagggcggaggggaccacttcctgtggatggcagctgggaaagcggttcggaggaggat
gagggcggcacggcttttgatgtcgagacggactctgacatgaacagtcaggaatctcgt
tcggatctcgaagacatggaggatgctgagcatgtgccacaacaacagcagctacaacaa
gaggaaagtgagcaaccgcagccgtctagggaggaaaactcgacacctccagtaaccaac
ggccccttagtgtctaatgacgccagcatcagcagaaacctgcaggccatgtcctctcag
ctcttccaagctaaacgctgctttcgactcgcccccacctttagcaatgtactgctccgc
cctgcagctccagctaaccccgccccagactcagaccccgccccagtgcaagaagccaca
cctcctgctgaagaaatatcaagaagcatgagtccagagattgctaatggaaccaatgac
aatggtacattgcttacaaatcctgactctgattctgagggcagtgagcacagcaaccat
tcgatccacagtgagaaaaccctttctgagcgactagagattctgaccaatcagagtctc
atccaggtggtgaaggtcttcttggattggctgaggacgaacactgatatcatcctcatg
tgtgctcagagttctcagagcttgtggaacagactctcagtgctgcttaatttgcttcct
gagggcagcaagatgttagaaacagatttaggtctgaataagcatgtaacagaactgctg
aatgagtgtgagcagcctggtttggttcagtcgctgctgttgccagaggatctggccctc
cgccaccttcctgtcctcagcgtagcccaccgacgcctggacttcacaggccagagaccc
cctcttacccctctggacgagtgtgtggtgcgcgtgtgctgcattcgcagctttggtcac
ttcctcacaaatctccaaggcaacgtgttgcacttcaacccggaggcgggcatcttcacc
agcatcagccaatcagagcaggacaacctggttcagcaggccaaggcccagttccgcatg
gcggaggaggaagctcgcagaaaccggctcatgagagatatggcccagctacgcctacag
ttggaggtctctcagctggagggcagtctgcagcagcccaaagcgcaatcctccatgtct
ccttatctggtgccagataccacggttctctgccagcacctggggctgctcagacagctg
gctgccagcggctgcttcatcatcatcatccctcgcacagtgattgatggcctggatttg
ctgaagaaagagaactccggagcaagagatggaatcagattccttgagacagagttccgg
aaggggaacaggtacatccgctgccagaaagagatgggaagaagctttgagagggacaaa
ttaaaacgacaagacattgaagcctggcacctgtataagatggtggacagctgtcgccag
ctgacgggatctcagagcagtggagatgaagacaccgctggcatggtgaccatcctgaca
ggacacgcactagaggagctgactgaaagatcagcttccatgaaggcggctgtccaggcg
gtggcagcagcaggcatggagctgaagaacatcaccgacttctaccggcagtggaaagag
atgggctga
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