Carassius gibelio (silver crucian carp): 127975189
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Entry
127975189 CDS
T08819
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K08127
epiphycan
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
127975189
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
127975189
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Paralog
GFIT
Motif
Pfam:
LRR_8
Collagen
LRR_4
LRR_5
LRR_9
LRRNT
Motif
Other DBs
NCBI-GeneID:
127975189
NCBI-ProteinID:
XP_052435004
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Position
A4
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AA seq
720 aa
AA seq
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MITLRLMWGLLVLCVVAASPRRYARQAELDNYDNNNVDLDKNVDGTDVYDYYDGFDEPQI
EIGTLSPDEDIDPSHHASLEEEEEEEREDKELPIKPQLIPSGFGESGTLMGPSAQGEEEL
RLTPTDILQISGDISGSGVPLGSGGPGTSGDISGSVDSEDLGSGVSGLSGSGIILISGRE
EELHLTFETIPHEASGDLGEYGISWESGVSGLPEVSGESGASGVPELSGESGASGVPELS
GESGASGVREVSGASGVPEVSGEPGVSGVPEVSGEPGVSGEPEVSGEPGLSGLPDCLGEY
GVPEVSGEPGASGVHEMSGESGLSGVPEVSGESGTSGVPEVSGEPVISGVPEVSGESGLS
GVPEVSGESGLSGLPEVSGESGLSGVPEVSGESGLSGVPEVSGESGTSGMPEISGLNEVF
GEPVVTVLPDVSGVPEETKQPKVTFESGESGSPEESGVTEAPVVTTEILIPDLDEEEAIL
LTTPTTPLEGTGGEIGSGLPDFDKDIETDQTGMATCMLCTCLVGSVYCDDLKLDRVPPLS
KDTTHFYARYNKIAKISKSDFINLNKLKRIDLTSNGISRIDDDAFFGLPALEELILRENS
IRQLPALAPSMTLIDASHNQLGSTGIQREAFKDMSGLLYLYLTDNNIDHIPVPLPDSLRS
LHLQNNNIQMMHEDTFCNPHDLNYIRNALEDVRLDGNPINLSRTPQAYICLPRIPVGALI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgataacgctgaggttgatgtggggactcctggtcctgtgtgtggtggcagcctctccc
cgcagatatgccagacaagcggaattagataactatgacaacaacaatgtggacttagac
aagaatgtggatggtactgatgtctatgactattacgatggatttgatgaaccacagata
gagattggaaccttgagccccgatgaggacattgatccttcacaccatgcctcattggag
gaggaggaagaggaggagagagaagacaaagaattacccataaagcctcagctgattcca
tcaggctttggggagtcagggactctgatgggccctagtgcacagggagaggaggagctt
cgtctgacgcccactgacatccttcagatttctggggacatttcaggttctggagtgcct
ttgggctcaggaggtcctgggacctctggtgacatatcaggttctgtggactcagaggac
ctaggttctggagtctctggactttctggttcaggcataatattgatctcaggtagagag
gaggagctccacttgacgtttgaaaccattccacacgaggcctctggggatttgggggag
tatggaatctcttgggagtctggagtttctgggttacctgaggtgtcaggagaatctggg
gcctctggggtacctgagctgtcaggagaatctggggcctctggagtacctgagctgtca
ggagaatctggggcctctggagtacgcgaggtgtctggggcctctggggtacctgaagtg
tcaggagaacctggggtctctggggtacctgaagtgtcaggagaacctggggtctctggg
gaacctgaggtatcaggagaacctgggctctctgggttacctgactgcttaggagaatat
ggggttccagaggtttctggagagcctggagcatctggggtacatgaaatgtcgggagag
tctgggctctctggggtgccagaggtatcgggagagtccgggacctccggggtgcctgag
gtgtctggagagcctgttatctctggggtgcctgaggtgtctggagaatctgggctctct
ggggtgcctgaggtgtctggagaatctgggctctctgggttgcctgaggtgtctggagaa
tctgggctctctggggtgcctgaggtgtctggagaatctgggctctctggggtgccagag
gtatcaggagagtccgggacctctgggatgcctgagatctctgggttgaatgaggtgttt
ggagagcctgtggtcactgtgctgcctgatgtgtctggggtcccagaggagactaaacag
cctaaggtcactttcgagtctggagaatctgggagcccagaagagtctggggtgactgag
gccccagtcgtcaccactgaaatattaatacctgacttagatgaagaggaagcgatactc
ctaactaccccaaccactcccttggaggggactgggggtgaaatagggtcagggctacct
gattttgacaaagatattgaaacagatcaaacaggtatggctacctgtatgctgtgcacc
tgcctggttggatctgtgtactgtgatgaccttaaactggaccgtgttcctcctctctcc
aaagacaccactcatttctatgcacgctacaacaaaattgctaagatcagcaagtctgac
ttcatcaacctgaataaattaaagaggattgatctgaccagcaatggaatttccaggatc
gatgatgatgctttctttggccttcctgctctggaggagttgatattacgagagaatagc
attagacaacttccagctctagccccctctatgaccctgattgatgcctcccacaaccag
ctgggcagcactggcattcaaagagaggcttttaaagacatgtcggggctactttacctt
tacttgacagacaacaacatagaccacatcccggttcctttgcctgacagtctgcgctct
ctgcacctacagaataacaatatccaaatgatgcacgaggataccttctgcaatccacat
gacttgaattacatccgcaacgctcttgaggatgttcgcctggacggtaaccccatcaac
ctcagcagaaccccacaggcctacatatgtttgccacgtatccctgttggtgcccttatt
taa
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