Carassius gibelio (silver crucian carp): 127975465
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Entry
127975465 CDS
T08819
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127975465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127975465
03036 Chromosome and associated proteins [BR:
cgib03036
]
127975465
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127975465
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127975465
PBAF complex
127975465
GBAF(ncBAF) complex
127975465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
127975465
NCBI-ProteinID:
XP_052435532
LinkDB
All DBs
Position
B16:complement(26186428..26203258)
Genome browser
AA seq
1100 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKFWESSETVSQLETVRLWIGKHY
KKYVQNDSPTCKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKSKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLSRPIVYIVSDMEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPAQVEEEEWLRPVMRKDKQVLVHWGYYPDSYDTW
VSTNDVDGDVEDPPSSEKPWRVHAKWVTDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRKDRKSLVAGKKRRRSPSPPSTPAESRKKGKKGNPGSQGRRRGHQNDDEQD
EDLTKDLEDPSPVPGMEDVTLPKNVNQKKDSENTPVKGGTVADLDDQGDDSLASGGKEED
EQGKIVVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRAHAFLEQWGLVNYQVDSESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQNFGLRTDI
YSKKNPKGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARSSGKVDPAFGLENSGIAGTAPEEPEKTEPTETEKMDTDSD
SQPDKAESKDEAEKPSESAEKPTETEKEKNETSEKSEPQEEEESEGGEPKTEKDKEEDME
TTEEGKEGEEEKEEGKKKLELDIGEGNISTAAAAALASAATKAKHLAAVEERKIKSLVAL
LVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQM
EQQAAAQQNAGGHHGPAPHGPPPHGPPPGMHPGHPGHPGHPGPGYPPMHHPMGPLHAPQT
GPMVGPGQPMPGQPMPGRMMPGPPPVGPSQGGMLPMMGPRHPGPPNGMYPGPPPTAQPDG
IPPGPVGPSVSAPPPRAAEN
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggctggacag
gcgggcgccggttcctcgatcggacggaaaaaagacggagggccgtcttccaaattttgg
gagagctcggaaacggtgtcgcagttggaaacagttcggctgtggatcgggaaacattat
aagaagtatgtccaaaatgactcccctacttgcaaaacgttggccgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttgggcgtagagtcagcaatcctgcccttaccaaa
ttacccgcaaagagctttctggatttcaaacccggaggagccctttgccacattctgggt
tctgcatacaagtccaaaagcgagcagggctggaggaggtttgatctgcagaacccatcc
agaatggatagaaacgtagagatgttcatgactattgagaagactcttgttcagaacaac
tctttgagccgaccaatcgtatacattgtgtctgacatggagcaaaagcaagccaacaag
ctcaaagacatcatcaagagacatcagggcaccatcactgaagataagtcaaaggccact
catattatttacccctccccagcccaggttgaagaagaggaatggctacgtcctgtcatg
cgcaaagacaaacaagttttggttcactggggttattaccctgacagttatgatacgtgg
gtatcaacaaatgatgtggatggagatgttgaggatccaccaagttctgagaaaccatgg
agggtgcatgctaaatgggtcaccgacacagatgctttcaacgagtggatgaatgaggaa
gattatgaagtggatgagaacaagaagcctgtgagtttccgccagcggatcttcccaggg
gaggaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggttgccggcaag
aagaggcgacgctctccatccccacccagcacccctgcagagtcccgcaaaaagggcaag
aaagggaatcctggatcacaggggagacgccgtggacatcagaatgatgacgagcaggat
gaagacctcacaaaggacctggaagatccctccccggtaccaggaatggaggatgttaca
ttgccaaagaatgtcaatcagaaaaaggacagtgagaacacgccagtgaaaggtggaacg
gttgctgatttggatgaccagggagatgattcactagcatctggtggcaaggaagaagat
gaacagggcaaaattgtggtcaatcgtctgattgactctgaggacaatgtgactgaacaa
acccatcacatcattatacccagctatgctgcctggttcgactacaacagtatacatgaa
attgagaggcgtgccctgccagagttcttcaatggcaaaaacaaatctaagactccagag
atctatctggcttatcgtaacttcatgattgacacgtaccggctgaatcctcaggagtac
ctgacctccacctcctgcaggagaaacctgactggagatgtgtgtgcggtcatgagagcg
catgcctttttggagcagtgggggctggtgaactatcaggttgattctgagagcagaccc
cttcccatgggtcctccaccaaccccacatttcaatgttctggctgatactccctctggc
ttggtgccgctgcaccaccgccccccgcaggttcctcctgctcagcagatgctgaacttc
ccagagaagggcaaagacaagccaactgacctgcagaactttggcctccgtacagatatt
tactcaaagaagaatcccaagggtaaaggggctgcaggtgggagagagtggactgagcaa
gaaacattgcttctgttggaggctctggagatgtataaggatgactggaataaggtttcg
gagcatgtgggcagccgtacacaagatgagtgcatcttgcacttcctgcgtctgcccata
gaggatcaatacctggagagttctgaagcctcactaggccccttggcttaccagccgatc
ccctttagccaatcaggaaatcctgtcatgagcactgttgcattccttgcctctgtggtc
gacccacgcgttgcggcagctgctgccaaagcagctttggaggagttctcgcgtgtgcgt
gaggaggttcccacagagctggtggaggctcatgtgaagaaggtacaagaagccgcgcgc
agctcaggaaaagtagaccctgcattcggcctggagaacagtggcattgctggtacagcc
cctgaggaaccagagaagacagaacccacagagactgagaagatggacactgactcggat
tcccagcctgataaggcggagtcaaaggatgaagcagagaagcccagcgagtctgcagag
aagccgacagagacagagaaggaaaagaatgagacctcagagaaatctgagccgcaggaa
gaggaagagagcgagggaggagaacccaagacagagaaagacaaagaggaggacatggag
accacagaggaagggaaagagggtgaggaagaaaaggaggaaggaaagaaaaagcttgag
ttggatatcggagagggcaacatctccactgctgccgctgctgctctggcctctgctgcc
accaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtggctctg
ctggtagagactcagatgaagaagctggagctcaaactcagacactttgaggagctggag
accatcatggaccgtgagaaagaagcactagagctccagaggcagcagcttttgacagag
cgacaggcgttccacatggagcagttaaaatatgctgagatgaaggctcgtcagcagatg
gaacagcaggcagctgcacagcagaatgcaggaggacatcacggaccagctccacatggc
ccacctccgcatggtccacctccaggcatgcaccctggacacccaggacatcccgggcac
cctggccctggatatccccccatgcaccatcccatgggtcccctccatgcccctcagaca
ggaccaatggttggaccaggccagcccatgccaggtcagcctatgccaggccgaatgatg
cctggacctcccccagttggaccctcacagggtggcatgctgcccatgatgggccctcga
caccccggaccacccaacggcatgtacccaggtccacctccaaccgcacagcctgatggg
attccccctggcccagtgggaccttctgtatctgcgccccctcctcgtgctgctgaaaac
taa
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