Carassius gibelio (silver crucian carp): 127977081
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Entry
127977081 CDS
T08819
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127977081
09123 Folding, sorting and degradation
03018 RNA degradation
127977081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127977081
03041 Spliceosome [BR:
cgib03041
]
127977081
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127977081
mRNA degradation factors
5'-3' decay
Lsm complex
127977081
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127977081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
127977081
NCBI-ProteinID:
XP_052437731
LinkDB
All DBs
Position
A4:complement(30844019..30845233)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDDETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgctcttgagagttacattaaccggacggttgccatcgtcacttcagatggg
agaatgattgtggggacgcttaagggcttcgatcagacgatcaatctcatcctggatgaa
agccacgagcgggtgttcagctcttcccagggagtagagcaggtggttctggggctgtat
attgtcagaggcgataatgtggctgtaattggtgaaattgatgatgaaaccgattctgcg
ctggatcttggaaacataagagcagaaccgctcaattctgtggttcactga
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