Carassius gibelio (silver crucian carp): 127977319
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Entry
127977319 CDS
T08819
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03420
Nucleotide excision repair
cgib04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127977319
09124 Replication and repair
03420 Nucleotide excision repair
127977319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
127977319
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127977319
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
127977319
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
127977319
TCR (transcription coupled repair) factors
Cul4-CSA complex
127977319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
127977319
NCBI-ProteinID:
XP_052438128
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All DBs
Position
B18:complement(16271576..16290030)
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AA seq
1110 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVQFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESGRN
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSVSVRLVT
QDSKALVSEWKEPQGRNISVASCNSTQVVLAVGRVLYYLQILTGELKQISSTEMEHEVAC
LDITPLGESAGESSICAVGLWTDISARLLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDTSGTTAAVRASASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFSGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKQMEGSFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSESWYSLLLDLQNRLNKVIKSVGKIEHSLYPSAAERE
RVCVCVCVREIEREFVCVCERDRERERLCV
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgttgtgacggcgcagaagccgacggcggtgaacgcctgcgtcacg
ggtcacttcacatctgcggaggatctgaacctgctgatcgccaagaacacgcgtctggag
atctatgtggtcactgctgagggtctgaggccggtcaaagaggtcggcatgtacggcaag
atcgcggtcatggagctcttcagacccaagggtgagagcaaagatcttctgttcattctg
accgctaaatacaacgcctgtatcctggagtacaagcagaacggagacagcatcgacatc
atcacccgcgctcacggaaacgtgcaggatcggatcggccgtccgtctgagaccgggatc
atcgggatcgtggatccggagtgtcgtatgatcggcttgcggctgtacgatgggctgttt
aaggtcattcctctggaccgtgataaccgcgagctcaaagccttcaacattcgtctggag
gagctgcaggtcatagacgtccagttcctgtacggctgccaggcgcccaccgtctgcttc
atatatcaggatcctcagggtcggcacgtcaagacatacgaggtttctctcagagagaag
gagttcaacaaaggaccctggaagcaggagaacgtggaagctgaagcatcgatggtcatc
ccagtcccagagccgtttggaggagctataatcatcggacaggagtccatcacttatcac
aacggagacaaatacttagccatcgctcctccaactatcaagcaaagcaccatcgtgtgt
cacaaccgcgtggatccgaacggctcgcggtacctgctgggagacatggagggacgactc
ttcatgctgctgttggagaaagaggagctgatggacggagctgtggtgctcaaagacctg
cgggtggagctgctgggagagacctccatcgccgagtgtctgacgtatctggacaacggt
gtggtgtttgtgggctccagacttggagattctcaactagttaagctgaatgtggacagt
aatgaccagggttcgtatgtggctgtaatggagaccttcactaacctggggccgatagtg
gacatgtgtgtggtggacctggagagacaaggacagggtcagctggtgacgtgctccgga
gcgtttaaggaaggctctctccggatcatccggaatggcatcgggatccatgagcacgcc
agcatcgatctgcccggcatcaaaggtctgtggcctctccgctccgagtcgggcagaaac
actgatgacatgctggttctgtcgtttgtgggtcagaccagggtgctgatgctgagtgga
gaggaggtggaggagacggagctgccggggtttgtggataatcagcagacgttcttctgt
gggaatgtagcgcatcagcagctcatacagatcacgtcggtgtctgtgaggctggtcact
caggacagcaaggctctggtgagcgagtggaaggagcctcagggcaggaacatcagcgtg
gcgtcctgcaacagcactcaggtggttctagctgtgggtcgagtgctgtattaccttcag
atcctcacaggagaactcaaacagatcagctctacagagatggagcatgaggtggcgtgt
ctggacatcactcctctgggtgagagcgcaggagaatccagcatctgtgctgtgggactc
tggaccgacatctcagcacgcctgctcaagttaccctgcttcagcccgctgcacaaagag
atgctgggcggagagatcatccctcgctccatcctcatgaccacgtttgagggcagtcat
tacctgctgtgtgcgctgggagacggggcgcttttctatttcggactggacattcagaca
ggtgttttgagtgagcgtaagaaggtgactctgggcactcagcccacggttctgcgcacc
ttccgctcgctctccacctccaatgtgttcgcctgctccgaccggcccaccgtcatctac
tccagcaaccacaaactggtcttctctaacgttaacctgaaggaggtcaactacatgtgc
ccgctcaactccgagggataccccgacagtctggctctggccaacaacagcacactgacc
atcggcaccatcgacgagatccagaagctccacatcagaaccgttcctctctacgagtcg
cccaagcggatctgctatcaggaggtttctcagtgtttcggagttttgtccagtagagta
gagatgcaggacaccagcgggacaacagcagccgtgcgggccagcgccagcacacaggcg
ctctccagcagtgtcagctccagtaagctgtttcccagcagcacttctcctcatgagacg
tcgttcggagaggaggtggaggtgcacagtctgctggtggtggatcagcacacgtttgag
gtgctgcacgcgcatcagttcctgcagaatgagtatgcactgagtatggtgtcctgtaag
ctgggcagagatcctgcggtctacttcatcgtcggcacggccatggtgtatccggaggag
gcggagcctaaacagggccgcatcatcgtctttcactacacagacggcaaactgcagacg
gtggcagagaaggaggttaaaggtgcggtttactccatggtggagtttagtggtaaactg
ctggccagcatcaacagcaccgtgcgtctgtacgagtggacggcagagaaggagctgagg
accgagtgcaatcactataataacatcatggccctgtatctgaagactaaaggagacttc
atcctggtgggagacctgatgcgctccgtgctgctgctggcctacaaacagatggagggc
agcttcgaggagattgctcgtgacttcaatcctaactggatgagtgctgttgaaatcctg
gatgatgacaacttcctcggagcggagaacgctttcaacctgttcgtctgccagaaggac
agcgcggcgacgacagacgaggagcgacagcacctgcaggaggtgggtctgttccacctg
ggagagttcgtcaatgtgttctcacacggatctctggtgctgcagaatctgggcgagagc
tcgactcccacacagggctcggtgctgttcggcacggtcaacggcatgatcggtctggtg
acgtcactgtcagagagctggtacagtttactgctggatctacagaaccgactcaacaaa
gtcatcaagagcgtcggcaagatcgagcacagcttatatccttcagcagctgagagagag
agagtgtgtgtgtgtgtgtgtgtgagagagatagagagagagtttgtgtgtgtgtgtgag
agagatagagagagagagagactgtgtgtgtaa
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integrated database retrieval system
