Carassius gibelio (silver crucian carp): 127977338
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Entry
127977338 CDS
T08819
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127977338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127977338
03012 Translation factors [BR:
cgib03012
]
127977338
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127977338
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127977338
Translation factors [BR:
cgib03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127977338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
AAA_14
NB-ARC
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
127977338
NCBI-ProteinID:
XP_052438170
LinkDB
All DBs
Position
B18:complement(27612292..27660750)
Genome browser
AA seq
1020 aa
AA seq
DB search
MNHGYGNRRGRRGGSRRFGDGGSRWDGGAGFSGGGGYTRSSDWDSREKQGHGVEGAGGGG
GRGRGKHPPHLKGREIGLWYAKWGGIKRSEAERTSRAVVQMDEQREQHITQLLNSVQRDA
GRDADPSTSQSWRVKQEPSGHSYFDGDDPPEPQNIVKVPKIEPKEEKQENKDESGASVKE
ELNETDLEYLFQDVGRIPSLDEELKKDQKKKNDNARYLDMLKFREKLPSYGMREELVRLI
SSNQVLVISGETGCGKTTQVTQFILDDFIEKGMGSLCRVVCTQPRRISAISVAERVAAER
AESVGEGNSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPYLSSISHLVLDEIHERS
LQSDVLLTIVKDLLTAREDLKVILMSATLNAEKFSKYFNNCSMIHIPGYTYPVKEYLLED
VVELLRFKPQHQDRRPRYRRGFMHGQNVRPEKEQKEDEYHESWPCFARTLRDRYSDSTID
ALEMMDDDDKINLELIVALIRHIVMKEDHGAILVFLPGWDNISTLNDILMADQMFKSDRF
IIIPLHSLMPTVSQTQVFKKPPPGMRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDT
QNNIRTMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDNYQLPEIQRTPLEEL
CLQIKILKLGPIASFLRKTMDPPSDKAIELAITHLVDLNALNRNEELTPLGFHLARMPVE
PHIGKMILFGALLGCLDPVLTIAASLSFKDPFFIPLGKEKFADRRRKMLSQNSRSDHLTI
VNAFWGWEDAKKQGSRFEKEYCWENFLSANTLQMLHNMKGQFAEHLLAAGFVNSKDPKDP
SSNINSENEKLIKAVIVAGLYPKVAKIRPNHSKKRPMPVKVYTKADGKVCIHPKSVNAEE
TQFHYTWLIYHLKMKTTSIFLYDCTEVSPFSLLFFGGDVSIQKDQDQETIAVDVWIIFQS
PARIAHLVKDLRKELDVLLEEKIKSPHPVVWSDRGSKDCAVLSAIIDLITTEETPAGARQ
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgggtatggtaatagacgtggtcggagaggagggagtcggaggttcggagat
ggaggttccaggtgggatggaggggctggattcagcggaggtggaggatacacgaggagc
tccgactgggactcaagagaaaagcagggacatggagtagaaggagctggaggtggaggt
ggaagaggaagaggcaaacatccaccccatttgaagggtcgagaaataggactgtggtat
gccaaatggggtggaatcaaaagatccgaggctgagaggacatctagggctgttgttcag
atggatgaacagcgagagcagcacattactcagctgctgaactctgtccagagagatgca
ggcagagatgcggacccctctacatctcagagctggagggtgaagcaggagcccagtggc
cacagttactttgatggagatgatccaccagaacctcagaacattgtaaaagtgccaaaa
attgagcctaaagaggagaaacaggagaataaggatgagtcaggagcaagtgtgaaagaa
gaacttaatgagactgacttggagtacttattccaagatgttgggcggataccctccctg
gatgaggagctcaagaaagatcagaagaagaaaaacgataatgctagataccttgatatg
ctgaaattcagagagaagctgccttcctatggaatgagagaggagctggttaggctgatc
agttctaatcaggtactggtaatcagtggagagactggctgtgggaagaccacccaggtt
actcaattcatccttgatgacttcattgagaagggcatgggctctctctgcagggtggtt
tgcacacagccaaggcgtatcagcgccatatctgttgcagagagagtggctgcagaaagg
gcagagtctgttggagaggggaattcctgtgggtatcagatccgtctgcagagtcggtta
ccacggaaacaaggctcagtgttgtattgtactacaggcattattcttcagtggctccgc
tcagatccatatctttcaagcataagtcatctggtcctggatgaaattcatgagaggagt
cttcagtctgatgttcttctcaccatcgtgaaggacctgttaactgctcgagaagaccta
aaagtaatcctcatgagtgccacgcttaatgctgagaaattcagcaaatatttcaataat
tgttccatgatccatattcctggatacacatacccagtgaaagagtacttactggaggat
gtggtggaattgcttaggttcaagccacaacatcaggaccgcagacctcgctataggaga
ggatttatgcacggccagaatgtacggccagagaaagaacagaaggaggatgaataccac
gagagctggccctgcttcgcccgcacactcagagaccggtactcagacagcaccattgat
gcgctggagatgatggatgatgatgacaagatcaatctggagcttatcgtagcattgatc
agacacatcgtgatgaaagaggatcatggagcgattctagtgtttcttcctggatgggac
aacatcagcaccctgaatgatattctcatggctgaccagatgtttaagtcagatcggttt
atcatcatccccctccactctttgatgcccacagtgtctcagactcaggtgttcaaaaag
ccacccccaggaatgcgtaagattgttatcgctaccaacatagcagaaaccagtatcaca
atagatgatgtcgtgtatgtgatagatggagggaagattaaagaaactcattttgacacc
cagaacaacatcaggaccatgacagcagagtgggtgagcttagccaatgccaaacagagg
aaaggccgtgctggcagagtgtctcctgggaaatgctatcacctgtataatggattgagg
gccagcctcctggataactaccagttacctgagatccaacgcactccactggaagagctt
tgcttgcaaataaagatactgaagttgggacccattgcatctttcctgcgaaaaaccatg
gaccccccctcagacaaagcaatagagctggccatcacacacctggtggacctgaatgct
ctaaaccggaatgaagaattaactccattaggatttcatcttgcccgaatgcctgtggag
cctcacataggaaaaatgattctgttcggggctcttctgggctgtttggaccctgttctt
actattgcggccagccttagctttaaagatcccttcttcataccgctgggaaaggagaaa
tttgcagaccggaggaggaaaatgctctcccaaaactctagaagtgatcatctcactatt
gtcaatgcattttggggctgggaggatgctaagaaacagggcagcagatttgagaaggaa
tactgctgggaaaacttcctttctgccaacaccctacagatgcttcataatatgaagggt
cagtttgcggagcatcttttggcagctggctttgtgaatagtaaggaccctaaagatccc
agctctaacataaattcagagaatgagaagctgattaaggctgtgatcgtggcaggtttg
tatcctaaagtggccaagattcgccccaaccatagtaagaagagaccaatgccagtgaag
gtgtacactaaggctgatgggaaagtgtgtatacaccctaaatctgtcaatgcagaggaa
actcagttccactacacatggctcatttatcacctgaagatgaagacaactagtatcttc
ctctacgactgcaccgaagtgtctccattttcattgttgttttttggaggggatgtttcc
atccagaaggaccaggaccaagagacaatcgctgtagacgtgtggatcatatttcagtcc
ccagcacgcattgctcaccttgtcaaggacctgaggaaggagcttgacgtgttactagag
gagaagataaaaagtccacatcctgtggtctggagtgaccggggttctaaagattgtgct
gttctttctgctataattgacctcatcacaacagaagaaacccctgctggagcccgccag
tga
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