Carassius gibelio (silver crucian carp): 127977848
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Entry
127977848 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127977848
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127977848
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127977848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
zf-C2H2_DHX34
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_16
AAA_19
AAA_23
XAF1_C
Motif
Other DBs
NCBI-GeneID:
127977848
NCBI-ProteinID:
XP_052438973
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All DBs
Position
B18:complement(20603659..20614096)
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AA seq
1139 aa
AA seq
DB search
MSHEREESRSWDWDSPRCRAQLDEVFFRHHDYIQTGSAEHKEFWSFFERFQRFRAKKEMS
AARSSKQESHRKKSGSVDLGLPREYDARYRINISVCSKDIEERLGGSDHRRRRDPSGAGR
QEITDCRLALLHFLDFNQKQSFNKLSKLRKEQKSLPIFQYRDRIVELVRTHPVVLVAGDT
GCGKSTQVPQYLLASGFEHIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFEASRT
TATKLLFLTEGLLLRQIQRDASLGQYQVLILDEVHERHLHCDFLLGVLRSLLPLRPDLRL
VLMSATINIKLFSSYFNSAPVLQVPGRLFPIQVIYQPIPPEEQGSRSEKLDPRPYLRVLQ
GIDQRYPPEERGDLLLFLSGVAEISTIQEACQTYATHTQRWIVLPLHSTLSLAQQDKVFD
IAPPGVRKCIISTNIAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQ
RKGRAGRTGPGVCYRLYSESDYDAFASYAVPEIHRVALDSLILQMKSMGLGDPRSFPFID
PPPASSIQTAVMYLKEQGALDEHGELTPIGRLLAQLPVDVVIGKMLVLGSVFNLVEPVLT
VAAALSVQSPFLRSAQHNPDCSTTRQPLNSNQGDPFTLMNTFNAWVQVKADRGSGSRKWC
RRRGLEEQRLYEMVNLRRQFKELLRSHGLLEADPGGRREPQDRVRRRERLTERQKLHQLK
RDHDLQESTKRKVLRLEEGLEGDLSGSDDEGAGTSKKRREDAEQTVDIQEVKFKLRHNVN
ELQEAAYASADLSSRQQTLLKLVLCRGLYPQLAIPDEHNATRKDSEQVFHTRNKQGVVIH
PTSVFASDPEVLHVSEHESSEFGADKGQSNRHQLLAFVTLLETNKPYISNCLRVPALQAL
LLVASSVDSNADCTRVVLDGWLELGLMDGNSALKVLSSALGLRGEWERLLQLQIGQGGLG
TGGPKVSRKELDKLCEGLVRFLLYTEVSYSLRRLTALQSQNLYIGPQLDPDLSSASAIGS
LFPGMKAEPDPIKGGLRLCSYFTYNCLCDSKDLYSECLRTFWTCPQCDLYMPLTPLERMQ
HEAICRPPEEQQPEDESESVQTSSSSSSGLTRVYHCDICNKDLTLTSTEILKHKRQHLS
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatgagcgagaggagagtcggagctgggactgggacagtcctcggtgtcgagcc
cagctggacgaggtgtttttccgccatcacgactacatccagacgggcagcgccgaacac
aaggagttctggagcttctttgagcgcttccagagattcagagccaagaaagagatgtca
gccgccagatccagcaaacaggagtcacacaggaagaagtctggatctgtggatctgggg
cttccgagggagtatgatgccaggtacaggatcaacatctccgtgtgctccaaagacata
gaggagcggctgggaggatcagatcacaggaggcgcagggatccctctggagccggcaga
caggagatcacagactgccgtctcgccctcctccacttcctagacttcaaccagaagcag
agcttcaacaagctgtccaagctgaggaaggagcagaagagcctccctatcttccagtac
cgggacaggatcgtggagctggtgcggactcatccggtggtgctggtggctggagacacg
ggctgtgggaagtccacacaggtgccgcagtatctgctggcctcagggttcgagcacatc
gcctgcactcagcctcgccgcatcgcctgcatctcactggccaagagagtcagctttgag
agcctcaaccagtacggctccaaggttgggtaccagatccgctttgaggccagccgcacc
acagctaccaaactgctgttcctgaccgagggtctcctgctccggcagatccagcgggac
gcttccctgggacagtaccaggtgctgatcctggacgaggtgcacgagagacacctgcac
tgtgacttcctgctgggagtgctgcgctcccttctgcccctgcgtccagacctgcggctg
gtcctcatgtcggccaccatcaacatcaaactcttctccagctacttcaacagcgcacct
gttctgcaggtgccaggcagactcttccccattcaggtgatctaccagcccattcctcca
gaagagcagggctcccgctcggagaaactggacccacggccgtatctgcgtgtgctgcag
ggtattgaccagcggtacccgccggaggagagaggagacctgctgctgttcctcagcgga
gtggcggagatctccaccatccaggaggcctgtcagacatacgccacacacactcagcgc
tggatcgtcctccctctgcacagcaccctctctctggcccagcaggataaggtgtttgac
attgcacccccgggtgtgagaaagtgcatcatttctaccaatattgctgagacctcagtc
actatagatggagtgcgctttgtggtcgattcaggaaaggtgaaagagatgagctttgac
ccgaaggccaagatgcagcggctgcaggagttctggatcagcagggccagttctgaacag
aggaagggacgagccggcagaactggaccgggagtctgttaccgactctactctgaatct
gactacgacgccttcgcctcgtatgctgttcctgagatccacagggtggcgctcgactcc
ctcatcctacagatgaagagcatgggtttgggtgaccctcgcagttttcccttcatagac
cctcctcctgcttctagtattcagactgcagtgatgtatctgaaagaacagggggctctg
gatgaacacggggagctcactcctattggccggctgctggctcaactgcccgtggatgtg
gtcattggaaaaatgttagttttgggatcagtctttaacctggtggagccggtgttgacg
gtcgccgctgcgctgagtgtccagtctccatttctgcgcagtgctcagcacaaccctgac
tgctccaccactcgccagcccctgaacagcaaccagggagaccccttcactctgatgaac
acctttaatgcctgggtgcaggtgaaagcggacagaggaagtggttccagaaagtggtgc
aggaggagagggctggaggaacagaggctttacgagatggtcaacctcaggcgacagttc
aaagagctgctgcgctctcacggtctgctggaggcagatcccggcggcaggagagagccg
caggaccgagtccggcgcagagagagacttacggagagacagaagctccaccagctgaaa
cgagaccatgacctccaggagagcaccaagaggaaagttctgcgcctggaggaaggactg
gagggagacctgtctgggtctgacgatgagggagcaggaaccagcaagaagagaagagag
gatgcagaacagactgtggacatacaggaagtcaagttcaaattgcgtcacaatgtgaat
gagctgcaggaagctgcatacgccagtgcagatctgtcttcacggcagcagactctgctc
aagctggtgctgtgccgcggtctttacccacagctggccattccagatgagcacaacgca
acccgtaaagactccgagcaggtgttccacacgcgaaataaacaaggtgttgttatccac
ccaaccagcgtgttcgccagtgaccctgaagtcctgcatgtctctgagcatgagtccagc
gagtttggggctgataaaggccagagcaacaggcatcagttactggccttcgttactctg
ctagaaacaaacaagccttacatctccaactgtctgcgggttccagcactgcaggccctg
ctgctggtggccagctctgtggacagtaacgctgactgcacgcgggtggtgctggacgga
tggctggagctgggcttgatggacggaaactctgcgctgaaggtgctctcctcggccctc
ggtctgcggggtgaatgggagaggctgcttcagcttcagatcggacagggcggcctcggg
acaggcgggcccaaagtgtcccgcaaagaactagataaactctgtgagggactagtacgg
tttctgttatacactgaggttagttacagtctgaggcgtctgacagcgctgcagtctcaa
aacctttacatcggaccgcaactggatcccgatctgtcttccgcttcagctatcggctct
ctgtttcctggcatgaaagccgaaccagatcccattaaaggaggcctgcgtttgtgcagc
tactttacctacaactgtctgtgtgactctaaggacctatacagtgaatgtttacgcact
ttttggacctgccctcaatgtgacctctacatgcccctgactcctttggagcgcatgcag
cacgaggccatctgcaggccgccggaggaacagcagcctgaggacgagtctgaaagtgta
caaacatcctcatcatcttcatcaggtctgacaagggtctatcattgtgacatctgtaat
aaagacctgactctcacctcgacggagatccttaaacacaagcgccagcacctgtcctga
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integrated database retrieval system
