Carassius gibelio (silver crucian carp): 127978650
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Entry
127978650 CDS
T08819
Name
(RefSeq) collagen alpha-1(XXII) chain-like
KO
K16630
collagen type XXII alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127978650
NCBI-ProteinID:
XP_052439410
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All DBs
Position
B19:30203503..30256627
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AA seq
1620 aa
AA seq
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MKFRFGLRISLVLTILALTLYGGLVEGQRAGCKNVHYDLVFILDTSSSVGKENFEKIRQW
VANLVESFDVGAEKTRVAVVRYSDRPTTEFNLGRYKTLDEVKRAAGNIRYLGGNTNTGDA
ISFTTNNIFTEWAGARPASKGIQKVAILLTDGRSQDFVLEPSIAAAAAGIRLFAVGIGEA
LREELEEIAAEPKSAHVFHVTDFDAIDKIRGRLRRRLCENVLCPNMKVQAGRFRPNSTSD
GLTEVPGFDLMEYFNVRDFLGEKFEPGQIPYVRLGTLPIVQQTEDVLPQGLPDEYAFVTT
FKFRKTSRKEDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVEN
LFDRNWHKIGMRVDSKSVSLFLDCKHIETLPIEEREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDGKQSEQETCCDIPGGPCEQSLVTERPPLPLPTPKPTSAEQKKPAGVNCSCPA
GERGETGLPGVTGPKGEKGDPGLKGAEGPPGPKGQKGERAISIKGDRGEKGDNGERGEPG
ARGERGERGSDGLPGLAGKKGDKGGRGEQGVAGEAGLPGPLGPKGIQGDAGPPGAPGPQG
VSGVTGGKGDKGASGERGEPGLDGFPGKSGLPGKDGPRGLVGAPGPDGVKGEKGERGPAG
LPGDGVQLAGLKGETGLPGERGSPGGEGPPGPPGPPGPPGLSGEPGENGHRGKKGEAGLP
GADGLPGPPGPQGPPGPPGNPGHTGPPGLPGERGFSGKSGEAGKPGLPGKDGLDGLPGND
GEKGQRGEPGQDGIPGGPGPKGDEGPPGPRGPPGQRGEPGLPGEVGTVGPKGERGGQGES
GKEGPIGSKGEKGDKGEIGPRGPAGVPGNVANVIPEPGEPGNPGEKGEKGDQGKPGEMGQ
RGLPGEQGFRGHAGPAGPKGDAGEKGETGRPGDPGPPGLTGPQGLQGLPGNVGIPGSIGP
PGIAGQRGDKGDAGKDGPPGPPGPIGQPGLRGEIGLPGKGKEGPKGDSGPPGPSGPPGLK
GLPGPQGMQGMPGNRGPPGEGTTGPDGPPGPAGPPGPAGLRGPPGVSGQQGPAGHNGVPG
RPGEKGSPGEPGKAADISDLNLKDICSDCPPGPAGQQGLPGPPGENGNTGPPGKNGQDGY
AGPPGPTGPAGPPGADGAKGIKGDRGPSGEPGDKGEKGPPGPPGYPGAAGVMGQPGNDGN
PGPIGPPGSPGEKGKDGLQGIQGPPGLPGLMGLIGKPGKDGRQGDTGEPGKQGESGQPGR
DGQRGMPGFKGHRGEPGPPGSKGEDGKQGVPGREGPPGKDGKTGPAGPEGMRGPRGEPGQ
PGEPGQTGKPGSQGNPGQLGHKGETGSPGLPGFPGPKGPLGPSGPIGPEGKQGMSGTPGD
RGQKGEKGDNGIKGDKGPVGDPGVPGNPGPPGRKGHTGMMGMSGPPGEVGPSGPPGSPGQ
PGLPGLRGETPSLEQMRRLIQEELSKQLDAKLAYLMAQMQPAHIKSSVGRPGPPGPAGKD
GPPGQQGPPGEPGIPGQNGAEGPRGPVGPKGEQGARGEKGEDGVGQRGEPGPTGPMGPAG
MPGYGKDGLPGAAGAQGEPGNPGPHGQPGPSGPPGQCDPSQCAYYASLASRPHTKNVKGT
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcgatttgggctcaggatctctttggtcctgaccatactggctctgactctg
tacgggggcttagttgagggacaaagggcaggttgcaagaacgtccactatgatctggta
ttcattttggacacctcttccagtgttggcaaggaaaactttgagaagatccggcagtgg
gtggcaaacctagtggaatcttttgatgtaggtgcggagaagacacgtgtggccgtggtt
cgctacagtgaccgtcctaccaccgaattcaacctgggcaggtacaaaacccttgacgaa
gtcaagcgtgctgctgggaacatccgctatctgggtgggaacaccaatactggagatgcc
atcagctttaccacaaacaacatcttcacagaatgggcaggggcgaggcctgccagtaag
ggcattcaaaaagtggcaatcttactaacagatggcaggagtcaggattttgttttggag
ccatcaatcgctgcagcggctgctggaatcaggttgttcgccgtaggaattggggaagca
ctgagggaggagcttgaggagattgcggcagagcccaaaagtgctcatgtgttccatgtg
acggactttgatgccattgacaagatcaggggcaggttgaggaggagactctgcgagaat
gtcctttgtccaaacatgaaagtccaggcgggccgtttccggccgaacagcaccagtgat
ggactgacggaggtcccaggttttgatttgatggagtacttcaatgtaagagattttctt
ggagaaaaatttgagcctggtcagattccctatgtccggcttggcaccctgcccatcgtc
caacaaaccgaagatgtgttacctcagggactgcctgatgaatatgcctttgtgaccaca
tttaagttcaggaagacctctcgtaaagaagactggtacctgtggcaggtctatgacaaa
tacggcatcccgcaggtctccatccgtctggacggggagaacaaggcggtggagtacaac
gctgtgggcctgacgaaggatgcggtccgggccgtgtttaagaacccggaggtggagaat
ctgtttgaccgtaactggcataagatcggcatgagggtggactccaagtcagtgtccctg
ttcctggactgcaagcacattgagacgctgcccatagaggaacgagaagacatcgacatc
cagggaaagaccgtcatcggcaagagactctatgacagcgttcccattgattttgacctc
cagaggatggtgatatactgtgatggcaaacagtctgagcaagagacgtgctgcgatatt
cccggtggcccatgcgaacaatctctggtgactgaacgccccccactcccactgcccacc
ccaaaaccaacgagcgctgagcagaagaaaccagctggggtcaactgctcctgtcctgca
ggggaaaggggagagacaggtctgccgggtgtcacggggcccaagggtgaaaagggggat
cctggtcttaaaggggcagaaggaccgccagggcccaaagggcagaaaggagagcgtgct
atctctatcaaaggtgatagaggagagaagggggacaacggcgagcgtggggaacctggg
gccagaggagaaagaggagaaagaggatcagacggtttacctggtctggctgggaaaaaa
ggcgataaaggagggagaggtgaacaaggagttgcaggtgaagctgggttacctggacct
ctcggaccgaagggtatccaaggtgatgcaggtccccccggagcaccaggtcctcagggg
gtgtctggtgttactggaggtaaaggagacaaaggagcttctggagaaaggggtgaacca
ggtttagacgggtttccagggaaatcaggacttccaggaaaagacggtcctagggggctg
gttggtgctcctggtccagatggagtaaaaggagaaaagggtgaacgaggtcctgctgga
ttacctggcgatggggttcagctggcaggactcaagggggagactggcctccctggtgaa
cgaggatccccgggaggggaaggcccacctggacctcctggcccacctggacctccaggt
ttgagcggtgagccgggtgagaacggacataggggtaaaaaaggtgaagcaggattgcca
ggagctgatggtcttccaggaccccctggccctcaggggcctcctggtcctccaggcaac
cctggacacacaggacctccaggattacctggtgaaagaggcttctcgggaaaatcagga
gaagcaggaaaaccaggcctgccaggaaaagatggattggatggtttgcctggaaacgac
ggcgagaaggggcaaagaggagagcccggacaggacggcatccctggcggaccaggaccg
aagggagatgaaggccctccaggaccacgaggaccacctggtcaacggggagagcccggt
ttgcctggagaggtcggcacagtaggacccaaaggagagagaggaggccaaggagagagc
ggaaaagagggaccgattggctcgaaaggagagaaaggagacaagggtgagatcggcccc
aggggtccagccggggtcccaggcaatgtggccaatgtaattcctgaacctggagaaccg
ggtaatccaggagagaagggagagaaaggagatcaaggaaaaccaggcgagatgggtcaa
agaggacttcctggagagcaaggattcagaggacatgcgggacctgcgggccctaagggg
gatgctggtgaaaaaggagagacagggagacccggagacccgggtcctcccggattgacg
ggccctcaggggcttcaagggctgccaggcaatgtgggtattccaggtagcattggtcca
cctggtattgctggacagagaggagataagggagatgctggtaaagatggcccccctgga
ccccctggtccaatcggtcagcctggtttaagaggagaaattggtttgccaggaaaaggc
aaagagggaccaaagggtgattctggacctccgggaccatcaggaccccctggactgaag
ggtttacctggtccacagggaatgcaggggatgccaggaaatagaggaccaccgggagag
ggaaccacaggacccgatgggcctcccggacctgcagggccaccaggaccagcgggtttg
agaggacctccaggagtgagcggacaacagggacccgctggacacaatggtgtaccagga
agacctggagagaagggctcccctggagaaccaggaaaagctgctgacatttctgatctg
aacttgaaggacatttgttcagattgtccccctggaccagctggacaacaaggtttgcca
ggacctccaggtgaaaatggtaatactggaccacctgggaaaaatggacaggatggatat
gcgggtcctcctgggccaacagggcctgcaggaccacctggtgctgatggagccaagggg
ataaaaggagatagaggtccttcaggagaacctggagataaaggagaaaagggcccccca
ggacctcctggttatccaggggctgcaggagttatgggtcagccaggtaatgatggaaac
cctggacctatcggaccacctggatctcctggagaaaagggtaaagatggacttcagggt
attcagggaccacctggtcttccaggtctaatgggcttgattggtaaacccggaaaggat
ggaagacaaggtgacacaggagagccgggcaaacagggagaatcgggacaaccaggaaga
gacgggcaaagaggaatgcctggtttcaaaggtcacagaggggaaccaggaccaccaggg
tcaaagggtgaagatggcaaacagggtgttcctggacgtgagggtccacctgggaaagat
ggtaaaaccgggccagcggggccagagggcatgagaggaccacgaggggaacccggtcag
cctggagaacctggacaaacaggcaagcctggatctcaaggaaatcctggtcagctagga
cacaaaggtgaaacagggagtccagggttacccggcttcccaggtccaaaagggccattg
ggtccatctggtccaattggcccagaaggcaaacaaggcatgtcaggaacaccaggagac
agaggacagaagggagaaaagggtgataatggaataaaaggagacaaaggacccgttggt
gatccgggtgttccgggtaaccctgggcctcccggcaggaagggtcacacagggatgatg
ggcatgtcgggtcccccaggggaagtgggtccctctgggccccctggttctccaggacag
ccgggtctcccaggtctcagaggagagacgccatcactggaacaaatgcggcggctcatt
caagaggaactctccaaacagttagacgcaaagttagcttacctcatggctcaaatgcag
cctgcgcatatcaagagctcagttgggcgccctggtccacctggtccggcaggtaaagat
ggacctcctggccaacaaggaccaccgggagagcctggaatacctggacaaaatggagca
gaaggacccagaggtccagttggtcctaaaggtgaacaaggtgcaagaggagaaaaggga
gaggatggtgttggacagagaggagagcctggtccaactggtcccatgggtcctgcaggt
atgccgggatatggaaaagatggtctccctggagccgcaggtgctcagggagagcctggt
aatcctggtcctcacggtcagcccggaccttctggaccaccagggcagtgtgacccctca
caatgtgcctactacgccagtctggcatcaagacctcacaccaaaaacgtcaaggggact
taa
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