KEGG   Carassius gibelio (silver crucian carp): 127978830
Entry
127978830         CDS       T08819                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127978830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgib03041]
    127978830
Spliceosome [BR:cgib03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    127978830
 Complex C
   U5 SnRNP specific factors
    127978830
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Cytochrom_D1 Beta-prop_IFT140_2nd WD40_like Beta-prop_Nup120_160 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 127978830
NCBI-ProteinID: XP_052439715
LinkDB
Position
B19:23258591..23262800
AA seq 347 aa
MIEPKKRVAEMAVVPAGVKRPRTELVSAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILLWNVYGECENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSVDGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTTRRILYKLPGHAGSVNEVAFHPDEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgtgtcgcagagatggcagtggttcccgccggagtgaagagg
ccccggaccgaactggtgtctgcggcgcagtcccagcagctctctgcgatgggccccccg
cgcagctccagtctgcaggctcctataatgctgctctctggtcatgaaggtgaagtttac
tgctgcaaatttcaccccaatggagccacgttagcctcctctggatatgaccgtctcatc
ttgctgtggaatgtatatggagagtgtgagaactatgcaacacttaaaggccacagtgga
gctgtgatggagcttcattataacacggatggcagtctgctcttttcagccagtacggac
aagacggtgtgcgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggtcac
acttccttcgtgaactcatgttttccggctcgccgtggaccacagctggcctgtacgggc
agtgatgatggaactgtgaagctgtgggacattaggaagaaggcctctgttcacacattc
cagaacacgtatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaatgacataaaggtatgggacctcagacagaacaagctgatttacagt
atgcagggtcatggagactctgtgacaggtctgagtctcagtgtagacgggtcttacctg
ctgtctaactcaatggataacagcgtgcgtgtctgggatatccgtccatttgccccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatcttctcaga
tgctcttggtctcctgatgggagtaagattgcagctggctctgctgacaggtttgtgtat
atttgggacacgacgacccgtaggatcctttataagctcccaggtcatgctgggtctgta
aatgaggtcgctttccatccagatgaaccaattgttctctctggatccagtgataaacgc
ctctacatcggagagattcaataa

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