Carassius gibelio (silver crucian carp): 127979015
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Entry
127979015 CDS
T08819
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127979015
09122 Translation
03013 Nucleocytoplasmic transport
127979015
03015 mRNA surveillance pathway
127979015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127979015
03041 Spliceosome [BR:
cgib03041
]
127979015
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127979015
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127979015
Spliceosome [BR:
cgib03041
]
Complex C
Other components
EJC/TREX
127979015
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127979015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
127979015
NCBI-ProteinID:
XP_052440069
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All DBs
Position
B19:15506188..15514534
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AA seq
273 aa
AA seq
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MYFFVVFSQSLHRLNENDVENELLDYEEDEVVRDTGLGHNSGIISIRKEGVKYVSIHSSG
FKDFLLRPELLRAIVDCGFGHLSQVQDESIPQAILGMDVLLXKTAVFVLATLQQLEPVTG
QVSVLVXCHTRELALQISKEYERFSKNKPSVKVAVFFGGLSIKKDDEVLKKESPHVVVET
PGCIXRFNLRHIKHFILDECDKMLEQLHMWRDVQEIFRMTPHEKQVMMFSATLSKEIRPV
CRKFMQDVITPLLLLCQQLLPFTRPPHTHLRPP
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgtatttctttgttgtcttttcccaatctctccacaggttgaatgagaacgacgttgag
aatgagctgttggactatgaggaggatgaggtggtcagggacacaggcctcggacacaac
agtgggataatatccatcaggaaagaaggggtcaaatatgtgtccatccactcctcagga
ttcaaggatttccttctcagaccagaactgctgagagctatagtggactgtggatttgga
catctgtcgcaggttcaggatgaaagcattcctcaggcgatcctggggatggatgtatta
ttatagaagacggctgtctttgtgttggctacccttcagcagctggagccagtgacaggg
caggtgtcagtgttggtgnnatgtcacacccgagagctggccttgcagatcagcaaagag
tatgagcgcttctccaaaaacaagcccagcgttaaagtggcagtgttctttggtggttta
tctataaagaaggatgatgaggttctgaagaaagagagccctcatgtggtggtggaaact
cctggatgcatttagcgtttcaacctgcgccacatcaagcacttcatcctggacgaatgt
gacaagatgctggagcagcttcacatgtggcgtgatgtccaggagatctttcgtatgacc
cctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaagagatccgtcccgtc
tgcagaaagttcatgcaagatgtaattacgcctctcttacttctatgtcagcagctcctt
cctttcacaagaccacctcatacccatttacggcctccctga
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