Carassius gibelio (silver crucian carp): 127979125
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Entry
127979125 CDS
T08819
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
cgib03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127979125
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127979125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127979125
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
127979125
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
127979125
NCBI-ProteinID:
XP_052440276
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Position
A4:34730028..34742743
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AA seq
549 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPG
GSEGSKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIRSVGINDVLEIKFFENRAN
GQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKISVHPGT
QSGQMSGEGKAGPPGIGGRSGFPLGKNRGRFPTPPGHGGDRFPGPGGPGGPPPHFSGMQG
PPRPPSGPPGPPGPPGPPPPGQGLLPPLGGPPNRGDRPPPPVMFPGQFGQPPMGPMPPGP
PPPGYGPPPGPPPLQQGLPPPGPFPPRPPGPLGPPLGLVPPPHMQGPPPGGPPPAPHVNP
AFFPPPGNNNMPSSDGRGPPPGDMYGRPPPYDRDYGPGGRDMDSSRAPLSEAEFEEIMNR
NRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSVSGSRRERSRERDHSRSNEKRHRKSRSRDRREDYYRERSRERDRHRDRDRERD
REREREYRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgttgaccacatcgatatttacgccgatgtagaagaggaatttaatcag
gagtcagactatcctgttcacgagcagattgacctgtatgatgatgtcatctcaccatct
gccaacaacggggacgcacctgaggaccgagattacctggacaacctgcctgcgccggga
ggatccgaggggagcaaaggagcgccgccgaacgtcgtctacacctacaccggcaaacga
atcgctctgtacatcggcaacctcacatggtggaccactgatgaagatttgaccgatgct
attcgctcggtaggcatcaatgatgtgctggagatcaagttttttgagaatcgggcaaat
ggccagtctaaagggtttgctctggtctgcgtggggtcagactcctcctccaggaagctg
atggatctgttgtccaagcgggagctacacggacaaaaccccatcgtcaccccttgcaac
aaacagtcgctcagccagtttgagatgcagtcgagaaaaatttctgtccacccaggcaca
cagtctggtcagatgtcgggagaggggaaggctggccctccaggtataggtggtcgcagt
ggcttccctcttggcaagaatcgaggacgctttcccacccctcctggccacggaggagac
cgcttccctggacctggtggacccggaggacctccaccacacttctcaggtatgcaaggc
ccgccgcgtcctccctcaggcccacctgggcctccaggaccccccgggccccctccacct
ggacaaggtctgctgccgcccctcggaggtcctccgaacagaggagaccgtcctcctcca
cccgtcatgtttcctggtcagtttggtcagcctcctatgggaccgatgcctccggggccg
cctccacctggatatgggcctcccccgggcccccctccacttcagcagggtctgccccct
ccaggacccttccctcctcgtcctcctggtcccttaggacccccgcttggcctcgtgcct
ccaccacacatgcagggaccaccgcctggaggtccaccgcccgcccctcacgtaaacccg
gccttcttccctccgcccggaaacaacaacatgccctcgtctgacggcaggggccctccg
ccgggggacatgtacggccgccctcctccatacgacagagactatggccctggcggcagg
gacatggattcgtctcgcgctcctctgagcgaagctgagtttgaggagatcatgaatcgt
aacagagcgatctccagcagtgctatctcaagggcagtctccgatgcaagcgcagctgat
tacggcagtgctatagagactctggtgacggccatctctctgatcaagcagtcgaaggtt
tctgccgatgaccgctgtaaagtcctcatcagctcgctgcaggactgcttgcatggaatc
gagtccaagtcctatggctctgtttcaggcagcagacgggagcggtccagagagagggac
cacagtcgctctaatgagaagcgtcaccgcaagtctcgcagccgagaccgccgcgaggac
tattacagggagcgcagccgcgagagagaccgccatcgtgaccgtgaccgcgagagagac
agagaacgtgagcgggagtatcgccgttag
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