Carassius gibelio (silver crucian carp): 127979161
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Entry
127979161 CDS
T08819
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127979161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127979161
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127979161
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127979161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
127979161
NCBI-ProteinID:
XP_052440332
LinkDB
All DBs
Position
B19:27785917..27805783
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AA seq
929 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLYNAANTNQKEKYESDLKKEIKKLQRLRD
QIKTWVASSEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTKKKKGDKEKQDRIEELKRMIERHRYHI
LMLETILRMLDNDSIQVDAIRKIKDDVEYYLDSSQDPDFEENEFIYDDIDLEELRKYLVH
ISEDSVVLNHNTFFFFHWFTFSFLFFFVAQPLVATSPGNTEDDIFQPSSSTPTSTTSSSP
IPPSPATCTTNSEDDKKRGRSTDSEISQSPIKNGNPSLSLSSSSSSSSSSSSSSSSSSGA
SSNALISMATVASSISSASGSSSLLGNMGGPLQNSGSYSSATQQQTPQSQQQHQPKNSVS
SLSNTNSASSSNSTLLPTSTSVSPPNTSTLGPLTPISQSQPPLGTGLSSSLGLGKGQSVT
SGTNQMPGLVLSGMPASLNSMTGFLSGSTPAPYAQAAAAGCVGSGLSASIGTNISSTNSS
GVVTSMGSNGSLGSTSLLGSGTGVLGLGFTQSALEPLPMVASSSVGGALTSGSNVGVIGS
NGGTSGTGNAVGNAVLPRPPSGPKQNGGTSYSAVVGDSTSDTALNSASQPQISQSSSSNS
STNQPKDSVSSLLGSMTLPPSSPSPSYSESKAGGGSLLNGPHSYTQAADTIKPQEPPSSL
KAMAERVAQGSGLEGDLSALHISSDIFPSSTAPSGTPAAPQSALSEVSIPPSLGVCPLGP
VPLSKEQLYQQAMQESTWTHMPHPSDSERIRQYLMRNPCPTLPFHQQMPPAHSDTVEFYQ
RLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY
IYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaacttcaaggtgagatagaccgatgtttgaaaaaagttgcagaa
ggggtagagcagtttgaggacatttggaaaaagctctataatgcagccaacaccaaccaa
aaagagaaatatgaatctgacctcaagaaagagattaaaaaactacagcgtctccgtgac
cagattaagacatgggtcgcctccagtgagatcaaagacaaaagacagctagtagagaat
cgcaaactcatcgagacgcaaatggagcgatttaagattgtggaacgggagaccaaaaca
aaagcgtattctaaagaaggacttggcctcgctcagaaagtcgatcctgcacagaaagag
aaagaagaggtcggccagtggctaacgaacacgatagacacgttaaacatgcaagtggac
cagttcgagagcgaggttgaatcgctttctgtgcagaccaagaagaagaaaggagacaaa
gagaagcaggatcggattgaggaactgaaacgaatgatcgagaggcaccggtatcacatc
ctcatgctggaaaccatccttagaatgctggacaatgactcgatacaggtggatgccatc
cgcaagattaaagatgatgtcgagtactaccttgattcctctcaggatcctgactttgag
gagaatgagtttatctatgatgacattgatttagaggagttgcgtaagtatttggtgcac
atatcagaagattctgtagttcttaatcataacactttttttttttttcactggtttact
ttttcttttctttttttttttgtagcccagccactagttgcaacatcaccaggtaacaca
gaggatgacatcttccagccctccagttccacaccgacctccacaacgtcgtcatctccc
atacctccttctccagctacttgcactacgaattcggaagatgataagaaaagaggtcgt
tcaacagacagcgaaatcagccagtcacctatcaagaatggaaatccatctttatctcta
tcttcatcttcctcctcctcatcatcgtcttcgtcatcatcatcctcatcctcgggagcc
tcttcaaatgctttgatctccatggcgactgtcgccagcagcataagctcggcatcaggg
agcagcagcctcttaggcaacatgggcggccccctccagaactctggcagctatagttca
gcaacccagcaacaaacaccgcaatcccaacaacagcaccagcccaaaaactcagtctcc
tctctctccaacaccaactcggcctcctccagcaacagtaccttactcccaacatccacc
tccgtgtcgccgcccaacaccagcacactgggcccactgacacccatctcgcagagccaa
cctccattgggaactggcctttcctccagtctgggccttgggaagggacagtctgtgact
agtggcacaaatcagatgcccggtctggttctttcagggatgccggcatccttgaacagc
atgactgggtttttgagcggatccaccccggcaccttatgcacaagcggccgcagcaggt
tgtgtgggcagcggactgtcagcatcgatcggaacgaatattagcagtactaactccagt
ggagtcgtgacctcaatggggtctaacggaagtctaggctccacaagcctcttgggctca
gggactggtgttctgggtcttgggttcacacagtccgctctggagcctttacctatggtg
gcttccagctctgtgggaggcgcactgacctcagggagcaacgtgggagttatcggaagc
aacggaggaacctctgggactggtaacgcagtgggaaatgctgtgctaccacggcctcct
agtgggccgaaacaaaacggcggaacaagttatagtgctgtggtaggagacagcacgtca
gacaccgccctcaacagtgccagccaaccacagattagccaatcctcatcctcaaattcc
tcaacgaatcagcctaaggacagtgtgtccagcctcctggggtcgatgacactgccgccc
agctcgccctcaccgtcatacagtgagagtaaagcaggtggtggcagcctgctgaacggc
ccgcactcatacacacaggcggctgacaccatcaagcctcaggagcctccgagctcttta
aaggcgatggcagagagggttgctcagggttcagggttagaaggagatctgtctgcacta
catatctcaagtgatatattccccagctccacggccccttcaggcactcctgcagctcct
cagtctgctctgtcagaggtgagcatccccccatcattgggtgtgtgtccactgggcccc
gtccccctgtccaaagagcaactctaccagcaagccatgcaggagtccacctggacgcac
atgcctcacccgtccgactcggagaggatcaggcagtacctgatgaggaacccctgccca
acactgccttttcaccagcagatgccacctgctcactctgacactgtggagttctaccag
agactgtctacagagaccctcttcttcatcttttactacctagagggtacaaaagcacag
tatctagcagccaaggccttgaaaaaacaatcatggaggttccacaccaagtacatgatg
tggttccagaggcacgaggagcccaagaccatcactgacgagtttgagcaagggacatat
atttactttgactatgagaaatggggccagagaaaaaaggaaggatttacatttgagtac
aggtaccttgaagaccgggacctccagtga
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