KEGG   Carassius gibelio (silver crucian carp): 127979364
Entry
127979364         CDS       T08819                                 
Name
(RefSeq) collagen alpha-2(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib04510  Focal adhesion
cgib04512  ECM-receptor interaction
cgib04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127979364
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127979364
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127979364
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cgib00535]
    127979364
Proteoglycans [BR:cgib00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   127979364
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 127979364
NCBI-ProteinID: XP_052440732
LinkDB
Position
B19:20966421..20987555
AA seq 691 aa
MDRFFIIFRSLVLLQVLCLAFSQVTGPPGPQGPPGPPGPAGTPGADGIDGEKGPPGPPGP
VGQKGEPGEPGPDGSPGEDGIDGLIGAKGERGPRGNPGPKGRPGPGGPPGRPGPGLPGLP
GAAGPIGLPGQIGPTGQKGDMGSPGAPGLPGPSGKPGPPGKFLGLEEGSADFQCPTNCPP
GPKGPQGLQGVKGHKGRAGVLGDPGSIGKVGGKGEVGISGEQGIPGPPGPQGLRGYPGMV
GPKGETGPRGYKGILGPIGIPGRPGEEGPQGPPGEPGDKGDMGERGVRGPQGVVGKKGEN
GLPGIDGKDGNPGIPGIKGATGQNGRPGAPGLQGDAGLPGMPGAKGEIGVKGETGPRGLT
GMQGLPGPQGEPGPPGEAGMEGVPGPKGDRGERGPVGPPGIVGLPGSKGERGPMGVPGAQ
GLTGTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGQSGEPGPKGQQGVTGDQGHNGPT
GDPGKPGDQGPAGLPGPRGLHGERGVPGMPGIQGRPGRDATDQHIVDVVLKMLQEKLAAV
AVSSKRAVLGGAGVMGPPGPPGPPGPPGPQGPHGLPGGRGIPGMIGGPGQIGNTGLKGKR
GAKGERGDPGRPHPGQPGPPGLPGPPGLDGVARDGRPGERGPQGAAGEPGRPGKVGLPGL
PGYCEAAACLAASAYTSPRLQEAGTVKGPST
NT seq 2076 nt   +upstreamnt  +downstreamnt
atggatagattcttcatcatcttcaggagcctggtcctgttgcaggtgctctgcctggcc
ttttcacaagtgaccggtccacctggaccgcagggcccccctggtccccctggccccgct
ggaactcctggtgccgacggcattgatggtgaaaagggtcctcctggacctcctggacca
gtgggtcaaaagggagagccaggcgagcctggtcctgatggatctccaggggaggatggc
attgatggtttgattggggctaagggtgagaggggccctcgtggtaatcctggaccaaag
ggtcggccagggccaggtggaccaccagggcgacctggacctggactgcctggacttcct
ggagcagcaggccccattgggcttcctggacaaattgggcctactgggcaaaagggtgac
atgggaagtcctggagctccaggattacccggaccttcaggaaagccaggtccaccagga
aagtttttgggtttagaggaaggcagtgctgacttccagtgtccaaccaactgtccacct
gggccgaaaggtcctcagggcctacagggagtgaagggacataaaggtcgcgctggggta
ttaggagatccaggaagcatcggaaaagtgggtggaaagggtgaagtgggcatctccggt
gaacaaggaataccaggccctccaggtccacagggtctgagagggtatccaggaatggtg
gggcccaaaggcgagacgggaccacgtggttataaaggaattttaggaccaatcggaatc
cctggacgccctggtgaagagggaccccaaggaccacctggagagcctggtgacaaaggc
gacatgggagagcgtggagtacgagggcctcagggagtggtcggaaagaagggagagaac
ggtcttccaggaattgatggaaaagatggtaatcctggcatcccaggaataaagggagcc
acaggacaaaatggaagacctggagcccctggtcttcagggagacgctggtttgcctgga
atgcctggagccaagggtgaaattggagttaagggtgagacaggacccagaggcttgacg
ggaatgcaaggtcttccaggacctcaaggagagcccggtcctccaggtgaagctggcatg
gagggagtcccaggaccaaagggggataggggcgaaagaggaccagttgggcctcctggt
attgttggcttgcctggcagtaagggggagaggggacccatgggtgtcccaggtgctcag
ggtctaactggtactaagggtgacaagggattccagggcaaagtgggatcaaagggagac
gttggtgatcctggtgtagagggattggctggggagaaaggagagaagggacaatctggg
gagcccggacctaagggacagcaaggtgtgaccggtgatcaagggcacaacggcccgacc
ggagatcccggtaaaccaggagaccagggtcctgcaggcttacctggtccacgtggccta
cacggagaaagaggagttccagggatgccaggaatacaaggacgacctggtcgtgatgct
acagatcagcacatcgttgacgtggtcctgaagatgcttcaagagaagttagctgcggta
gcggtgagctctaagagagctgtgctgggtggagcaggtgtgatgggccctccaggtcct
ccaggaccacctggacctccaggacctcagggtcctcatggactgccaggcggccgtggc
attcctggcatgatcgggggcccaggccagataggaaacactggtcttaaagggaagagg
ggtgcaaagggagagagaggagatcctggacgaccacatcctggccaaccgggaccacct
ggactgccaggtcctccaggtcttgacggtgtggctcgtgacggtaggccaggcgagcga
ggaccccagggtgcagcgggtgagccaggccgtcctggaaaagttggtcttcccggtctt
cctggatattgtgaagcagctgcatgtttggcagcatctgcctacacttctcccagatta
caagaggcgggaacagtaaagggcccatccacttaa

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