Carassius gibelio (silver crucian carp): 127979463
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Entry
127979463 CDS
T08819
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127979463
03015 mRNA surveillance pathway
127979463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127979463
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127979463
mRNA cycle factors
P-body specific factors
127979463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
127979463
NCBI-ProteinID:
XP_052440903
LinkDB
All DBs
Position
A4:35363601..35382629
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AA seq
1258 aa
AA seq
DB search
MSSMPAERKKSVNTEERETGSFSNKDRDAERQAAAPRDKSKDQTKMSTKTAEEKKRRAEE
DKRKKEEKERKKKEEEKQRAEEEQKKKEEEEKRQQEEQEKKLLEEEAKRQKEEEAAQIKE
KEEAEQLQQEAWERHHSRKELRAKNQRVQETRPEEAFFSRLDSSLKKNTAFVKKLRTLTE
QQRGSLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYADFAPLLLAA
WKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIATDRDAHT
HVSVIISFCKHCGDDIAGLEPRKVKNAVEKFGSTFPPSQIINTEKQQPFQNLLREYYTSL
TKHLKKDHRELQSIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADLLDEN
MPELPVDKTIQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVPAILF
KDNEKSSQTSKEGREANSTEELEIELEALDITDEPMDLDTADETESEELAKKILDEQEQE
DEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQ
RLDLLPFYARLVATLHPCMCDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELA
KFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLHTSVLLEQMMRK
KQAQHLDVRYVTMVENAYYYCNPPPMEKTVRRRRPPLQEYIRKLLYKDLSKVTTEKVLRQ
MRKLSWHEPDVKSYLICCMINIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGLLEDIR
LGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNTDGSPSPLDPPE
HLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLVYFQRYVWWKKSLDVWTKDQPFPIDIEY
MITDTLELLRPKMKLCSSLDEACAQVTQLEREFLVKLGLEKDGRSSSSMGENEPLEEEDD
DDEDERGAETEEQSGNESEMNEPEEEDGSENEEEEREEEEENTDYLTDSNKENETDEENN
EVTIRGGGLRHVSCAEDEDFIQALDKMMLENLQQRTGEAVKVHQLDVAIPLQLKSQLKRS
SAPSCTADTDVSNTMQFVMLTRRGNKQQFKILNVPLSSHLAANHFSQQQVEQEERMRMKK
LTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPRGAPNADLIFKTGGRRR
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtatgcctgctgaacgaaagaagtccgtcaacacggaggagagagagacgggc
tccttcagcaacaaggacagagacgcagagcgacaggccgctgcgccccgagacaagagc
aaagaccagaccaagatgagcaccaagacggccgaagagaagaagagacgggccgaggag
gacaagaggaagaaggaggagaaggagcggaagaagaaagaggaggagaagcagagggca
gaggaggagcagaagaagaaagaggaggaggagaagagacagcaggaggagcaggagaag
aagcttctggaggaggaagctaaacgacagaaagaggaagaggctgctcagatcaaggag
aaggaggaggcggagcagctgcagcaggaagcgtgggagcgtcatcacagcaggaaggag
ctgcgagccaagaaccagcgcgtgcaggagacgcgtcccgaggaggctttcttcagccgc
ctggactccagcctgaagaagaacacggccttcgtcaagaagctccgcacgctcacggag
cagcagcgcggctcgctgtcgcaggacttcgactcgctcaacctcagcaagtacatcggt
gaagccgtgagctccatggtggaggccaagctgaagatctccgacgtgggctgcgccgtg
cacctctgctcgctcttccaccagcgctacgccgacttcgcaccgcttctcctcgccgcc
tggaagagacacttcgaggccagaaaggaggagaaggcgcccaacgtgagcaagctgcgg
accgacctgcgcttcatcgccgagctcaccatcgtggggctgttcacggataaagaagga
ctgtcgctcatctacgagcagctgaagaacatcatcgccaccgaccgagacgcgcacact
cacgtctccgtcatcatcagcttctgcaagcactgcggagacgatatcgccgggctggag
ccgaggaaggtcaagaacgcggtggagaagttcggctcgaccttccctcccagtcagatc
ataaatactgagaaacagcagccgttccagaacctgctgagagaatattacacctcgctc
accaaacacctgaagaaagaccaccgagagctgcagagcatcgagagacagaacaggcgt
atccttcactctaaaggagagctcagcgaggacagacacaagcagtacgaggagttcgcc
acgtcctatcagaagctgctggccaacacacaaacgctggccgatctgctggacgagaac
atgcctgaacttcctgtggacaagaccatccaggaagagcacggtccgggcatcgatatc
ttcactccggggaaaccgggagagtatgatctggaaggagggatctgggaggacgaggac
gctcgtaacttctacgagaacatggtggatctgaaggcgtttgtccctgcgatcctcttc
aaggacaacgagaagagcagccagaccagcaaagagggacgagaggcaaacagcactgag
gagctggagatcgagctggaagcactggacatcaccgatgagccgatggatctggacaca
gccgacgagaccgagagtgaagaactggccaaaaagatactggatgagcaagagcaggag
gacgaggaggccagcaccggctctcatctcaaactcatcgtggacgccttcatccagcag
ctcccaaactgcatcaacagagacctgatagacaaggctgctatggacttctgtatgaac
atgaacaccaagtccaaccgcaggaagttggtccgagctcttttcacggtgcccagacag
aggctggatctgctgccgttctacgctcgtctggtggccacgcttcacccgtgtatgtgt
gacgtggctgaagacctctgctccatgctcaaaggagatttcaggtttcacatcagaaag
aaggaccaaatcaacattgagaccaagaataagacggtgaggttcatcggggagctggcc
aagttcaagatgttttccaaaacggacacactgcactgcctcaagatgctgctgtctgat
ttctctcaccatcacatcgagatggcctgcacactgctggagacgtgtggacgctttctc
ttccgctcaccggagtctcacctgcacacgagcgtcttactggagcaaatgatgcgtaag
aagcaggctcagcatctggatgtgcgttacgtgacgatggtggagaacgcgtattactac
tgcaaccctccgccgatggagaagacggtgcgcaggaggagaccgccgctgcaggagtac
atccgaaaactgctctacaaagacctgtccaaggtcaccactgagaaggtgttgaggcag
atgaggaagctgtcctggcacgagcctgatgtgaagagttatctgatctgctgtatgatc
aacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctcgctggactg
gtggcgtatcaggaggacgtgggcattcatgtggtggacggcctgctggaggacatccgc
ctcggcatggaggtgaaccagcccaagtttaaccagcggcggatcagcagcgctaagttt
ctgggcgagctgtataactaccgtatggtggagtctgccgtcatcttccgcacgctcttc
tccttcatctcgttcggcgtgaacacagacggttctccgagcccgctggacccccccgag
cacctgttccgcatccgcctggtctgcaccctgctggacacctgcggacagtacttcgac
cgcggctccagcaagaagaagctcgactgcttcctcgtttacttccagaggtacgtctgg
tggaagaagagtctggacgtgtggactaaagaccagccgttccccatcgacatcgagtac
atgatcacagacacactggagctgctgcggcccaagatgaagctgtgctcgtctctggac
gaggcctgtgctcaggtcactcagctggagagagagttcctcgtcaaactgggcctggag
aaagacggccgctcctccagctccatgggcgagaacgagcctctggaggaggaggatgat
gatgacgaagacgagcgaggagcggagaccgaggagcagtctgggaacgagagcgagatg
aatgaacctgaggaggaggacggctctgagaacgaggaagaggagcgtgaggaggaagag
gagaacacagactatctgaccgactccaacaaagagaacgagacggatgaagagaataac
gaggtcacgatccgcggcggaggactcagacacgtgtcctgtgccgaggacgaggacttc
atccaggcgctggacaagatgatgctggagaacctgcagcagcgcactggagaggcagtg
aaggtccatcagctggacgtggccatccctctgcagttaaagagccagctgaagagaagc
tccgccccttcctgcaccgcagacacagacgtcagcaacaccatgcagttcgtcatgctc
acacgcaggggcaacaaacagcagtttaagatcctgaacgtgccgctgtcgtctcatctg
gcggccaatcacttcagccagcagcaggtggagcaggaggagcgcatgcgcatgaagaag
ctgacgctggacatcaatgagcggcaggagcaggaggactatcaggagatgatgcagtcg
ctcgctcagagacccgctccagcaaacaccaacagagagcgccggcctcgataccagcac
cccagaggagcacccaacgctgacctcatcttcaagaccggcggcaggagacgctga
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integrated database retrieval system
