Carassius gibelio (silver crucian carp): 127984023
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Entry
127984023 CDS
T08819
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib00100
Steroid biosynthesis
cgib01100
Metabolic pathways
Module
cgib_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
127984023
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cgib01006
]
127984023
Enzymes [BR:
cgib01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
127984023
Prenyltransferases [BR:
cgib01006
]
Terpene biosynthesis
Squalene/phytoene synthase
127984023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
GST_C_8
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
127984023
NCBI-ProteinID:
XP_052442437
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All DBs
Position
B20:1591286..1603877
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AA seq
444 aa
AA seq
DB search
MAVVGGKSAAPFSVIKRSLSLRSVLSGGRRSAQEGRLVTRASHPLRTHRHPSFVCFSCQD
SMSETLRTCYAYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMSIPLEKKV
PLLQDFHTFLYQPEWSFSESREKDRQVLEDFPTISVEFRNLGQEYREVISDICYRMGVGM
SEFLEKKVSSMQEWDKYCHYVAGLVGIGLSRLFSASQLEDAEVGWDTELANSMGLFLQKT
NIIRDYLEDQQEGRAFWPQEAWSQFASRLEDFARPQHLSSALSCLNLLVTDALHHVPDVI
EYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATSMGAV
QSIIAQYSQEILQKVSASDPSREKTLRILSLIREKSLSPAALSSRAHHISPVYISAAMLL
AALSWQYMNAAAGQPPGGADMHGH
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggtcggcggcaagagcgcagcgccgttctccgtgatcaagcgctcgttgtcg
ctgcgctcggtgctctccggcgggcggcgcagcgcgcaggaagggcggctggtgacccgt
gcttctcacccgctccggactcaccgacacccctcctttgtgtgcttctcctgccaggac
tccatgagcgaaaccctgcggacctgctacgcgtatctgaaccagaccagccggagcttc
gcggcggtgatccaggccctggacggagagctacggcatgcggtgtgtattttctacctg
gttctgcgagctctggacacagtggaggatgacatgagcatcccgctggagaagaaggtc
ccattgctgcaggacttccacacgttcctctatcagccggagtggagcttcagcgagagc
agagagaaagaccggcaggtgctggaggatttccccacgatttcggtggagttcaggaac
ttgggccaggagtatcgcgaggtgatttcagacatctgttaccggatgggtgtggggatg
tccgaattcctggagaagaaggtttcatccatgcaggagtgggacaagtactgtcattac
gtggcgggtctggtggggatcggcctgtcccgtctgttttcggcgtcccagctggaggac
gctgaggtgggctgggacacagagctggcaaactccatgggtctgttcctccagaagacc
aacatcatcagagactatctggaggaccaacaggagggaagagccttctggccacaggag
gcctggagtcagtttgcgtcccgtctggaggatttcgctcgtcctcagcacctgagctct
gctctgtcctgtctcaacctgctggtgaccgatgctctccatcacgtcccagacgtcatc
gaatatctgtcccgcctccgcaaccagagcgtcttcaacttctgtgccattcctcaggtg
atggcgatagcgactctgtcggcgtgctacaacaatcctcaggtgtttcagggcgtggtg
aagatccggaagggtcaggccgtgacgctcatgatgcaggccacaagcatgggtgccgtc
cagagcatcatcgcacaatacagtcaagagatcctgcagaaagtgtccgcctcggatccg
tcgcgagagaagactctgcgcatcctgagcctcatccgagagaagagtctgtctccggcc
gcgctctcgtcccgagcgcaccacatctctcccgtctacatctcggccgctatgctgtta
gcggcgctcagctggcagtacatgaacgccgcggccggacagccaccagggggcgctgac
atgcacggacactga
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