Carassius gibelio (silver crucian carp): 127984423
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Entry
127984423 CDS
T08819
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04137
Mitophagy - animal
cgib04140
Autophagy - animal
cgib04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127984423
04137 Mitophagy - animal
127984423
04148 Efferocytosis
127984423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127984423
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127984423
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Cas_Csn2
Motif
Other DBs
NCBI-GeneID:
127984423
NCBI-ProteinID:
XP_052443020
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Position
B20:16186582..16202330
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AA seq
774 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHLDKASIMR
LTISYLRMRKLLSSDESEKENEEESQLNSFYLKALEGFLMVLSEDGDMVYLSENVSKSMG
LSQFDLTGHSIFEFSHPCDHEELREMLVYRTGSKKTKEQNTERSFFLRMKCTLTSRGRTV
NIKSATWKVLHCTGHVRVQECDEGSGDSGFKEPPLTYLVLICEPIPHPSNIEVPLDSKTF
LSRHTLDMKFSYCDERITELMGYEPDDLLNKSVYEYYHALDSDHLTKTHHNLFAKGQATT
GQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDVVLSLQQTMTEPK
AEEKENQEMEEEASEVDILKLFKPESLKCPVKSSELYEKLKEEPEALNVLAPSAGDTIIS
LDFNNSDSDMQLLKEVPLYNDVMLPSSSEKLPISLSPLTPSDSTPVLTKLDTGAEDFPFS
SASDRGPDSANTPSTSGLGSPGPNSPMDYCFQVDSDINSEFKLDLVEKLFAIDTEAKTPF
SSQAMEDLDLEMLAPYIPMDDDFQLRIPSPLDPLPSGPHSVSTMSSLFQPLSSPVSPASS
SSSTVKQEPSSQAPSPLHLLQEVCNAPVSPFSGSRDVSPARSPTPKSSNQLNNRELSPKM
LAVQNAQRKRKLAEVTSLSEAVGLSALLQSVDSAIEPGKRAKVLELKGSSVLGGNKTILI
LPSDVASRLLCSSLESSHGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQVN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcactgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tccagggatgcagcgcgatctcgcaggggaaaggagtctgaggtgttctacgagttagca
caccagctccccctgccacacaatgtcacctcccacctggacaaagcctccatcatgagg
ctgaccatcagctatctgcgcatgaggaagctgctcagctctgatgaatctgagaaggag
aatgaggaggagagtcagctgaacagcttttatctgaaggctctggagggtttcctcatg
gtcctgtctgaagatggagacatggtttatctctctgagaatgtcagcaagagcatgggc
ctctcacagtttgatctgactggtcacagcatctttgaattttcacacccatgtgaccat
gaggagctgagagagatgctggtctacaggacaggatccaaaaagaccaaggaacaaaac
acagagcgcagcttcttcctgcgcatgaagtgcacactcactagcagagggcgcactgtc
aatatcaagtctgccacgtggaaggttcttcactgcactggtcatgtgcgtgtgcaggag
tgcgacgagggttcgggagactctggctttaaagagcctcctctgacctaccttgtgctc
atctgtgagcccattcctcatccctcgaacatcgaggtgcctttggacagcaagaccttc
cttagccgccacactctggacatgaagttctcctactgtgatgaaagaatcacagagctg
atgggatatgagccagatgatctgctgaacaagtctgtgtatgaatactatcatgccctg
gattcagatcaccttaccaagacacatcacaacttgttcgcaaagggccaggccaccaca
ggccagtaccgcatgctggctaagaaaggtggttttgtgtgggtggagactcaggccact
gttatctacaatcccaagaattctcagccacagtgcattgtgtgcgtcaactacgttctc
agtggcattgtggagggggatgttgtcctgtccttgcagcagaccatgaccgagcccaag
gctgaggagaaagagaaccaggagatggaagaggaggcctctgaggtggacatactcaaa
ctcttcaagccagaaagcctcaagtgtcccgtgaagagctctgaactttacgagaagctg
aaagaggagcctgaggctctcaatgtcttggcaccttctgcaggagacaccatcatctct
ctggacttcaacaattcagactctgatatgcagctgctgaaggaggtgcccctctacaat
gacgtcatgctgccctccagcagcgagaagctgcccatcagtctgtctcctctgacgccc
agcgactccacccctgttctgaccaaattagacaccggagcggaggacttccctttcagc
tctgcctctgatcgtggtccagactctgcaaacacaccttccacatctggactgggctcc
ccggggcccaacagccccatggattactgtttccaagtagactccgacatcaattctgaa
ttcaaactggacctggttgagaaactgtttgctattgatactgaggcaaagacccctttt
agctcccaggccatggaggatctcgacctagagatgctggctccatacatcccaatggat
gatgacttccagctgcgcattccctctccgctggatccgctcccgtctggccctcactct
gtgtcaaccatgagctccctgttccagcccttgtcctcccctgtgtctccagcctcttcc
tccagcagcacagtgaaacaggagccgtcatctcaggccccttcacccctgcacctgctg
caggaggtgtgcaatgctcctgtctcacccttcagtggcagtcgggacgtttcccctgcc
cggtcccccaccccaaagagcagcaatcagctcaacaacagagagctgtctccaaagatg
ttagctgtccagaacgcccagcgtaagaggaagctggcggaagtgacatcactttctgag
gctgttggattgagtgctttgcttcagagtgtggacagtgctatagagcctggaaagagg
gcaaaggttttagagcttaaaggatcaagtgtgcttggaggaaacaaaaccattctcata
ctgccctctgatgtggccagtcgtctgttgtgcagttctttagagagcagccatgggctg
cctcagctaacacgttacgactgcgaagtcaacgctcctgtgcaggaccgccatcatctg
ctgcagggagaggagctcctgcgtgctctggaccaagtcaactga
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