Carassius gibelio (silver crucian carp): 127984453
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Entry
127984453 CDS
T08819
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127984453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127984453
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127984453
U7-dependent histone pre-mRNA processing factors
127984453
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
TFIIF_alpha
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
127984453
NCBI-ProteinID:
XP_052443056
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Position
B20
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AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLENISRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLCSQPDLESGFSRELFIQWCQEAKNSVILTYRTT
PGTLARYLIDTPGEKRIELEIRKRCRLEGRELEEYMEKEKMKKEAAKKLEQTKEVDMDSS
DESDIDDDLEQPAVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERLKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLTNGEEPMEQDLSDVPTKCTSVTQALDIRARVMYID
YEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVEKVDTGVIAEMGDTKEETED
GEPAMDVTPDLTTEPSAAANQRAIKTLFGDDEREISEESDVIPTLEPLPANEVLGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCHCDDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgacggctctttccggagtgcaggaggaatctgctctgtgt
tacctgttacaagtggatgagttccgcttcctgctggactgtggctgggatgagagtttc
tccatggacatcatagactccctgaagcggtatgtgcatcaggtggacgcagtgctgctc
tctcacccggatcctctgcatctgggcgctttaccgtacgctgtgggcaaattggggctc
aactgcaccatctacgccaccatccctgtctacaagatgggtcagatgttcatgtacgat
ctctatcagtctcgacacaacactgaagatttcactctgttcacgctggatgacgtcgat
tcagcttttgacaaaatccagcagctgaaatactctcagatcgtcaacctgaaaggaaaa
ggtcacgggttgtccatcaccccacttcctgcgggtcacatgatcggtggcactatctgg
aaaatagtgaaggatggagaggaagagatcatctatgctgtggatttcaaccacaagagg
gagattcatctgaacggctgctcgctggagaacatcagcagaccgtctctcctcatcaca
gactccttcaatgcctcgtatgttcagcctcgcaggaaacagcgtgacgagcagctgctc
accaatgtgatggagacgctccgaggcgacgggaacgtgctgatcgctgtggacacggcg
ggacgagtgctggaactggctcagctcctggatcagatctggaggaccaaagatgcagga
ttgggcgtttactcgctcgccctgctcaacaacgtcagctacaacgtggtggagttctca
aagtcccaggtggagtggatgagtgataaactgatgcgatgcttcgaggacaagaggaac
aaccctttccagtttcggcacctgtctctctgtcacagcctgtctgatctggcccgtgtg
cccagcccgaaggtggttctgtgcagtcagcccgacctggagtccggcttctcacgggag
ctcttcatacagtggtgtcaggaagccaagaactctgtcatcctcacctacagaaccaca
ccgggaacgctggcccgctacctcatagacaccccaggggagaagaggattgagctggag
ataagaaaacggtgccgactggaaggacgagaactagaggaatacatggagaaagagaaa
atgaagaaagaggctgccaaaaaactggagcagacgaaagaggtggacatggactcgagc
gatgagagcgatatagacgatgatctggagcagccggcggtggtgaaaaccaaacatcac
gacctgatgatgaagggcgagggcgggaggaagggcagcttcttcaaacaggccaaaaag
tcctaccccatgttccctacacacgaggagcgactcaaatgggacgagtacggcgaaatc
atcaggcccgaggagtttctggttcctgagctccaggccacagaagaggagaagagcaag
ctggagtccggactgactaacggagaggagccgatggagcaggacctgtccgacgtcccc
accaaatgcaccagcgtcacacaagcgctagacatcagagctcgagtcatgtacatcgat
tacgagggccgttctgacggcgactctattaaaaagatcataaaccagatgaaacccaga
cagctgatcatcgttcacgggccgccggaggccagccaggacctggccgagtcctgcaag
gccttcagcggcaaagacatcaaagtttacacgccaaaactgcaggagaccgtggatgcc
accagcgagacccacatttaccaggtcagactgaaggactcgttggtcagttcactgcag
ttctgtaaagccaaagacacggagctggcgtggatcgatggcgttctggacatgcgggtg
gagaaagtggacacgggtgtcatcgcagagatgggagacaccaaagaggagacggaggac
ggagagccagccatggatgtcacgccggacctgacgactgagcccagcgccgcggctaac
cagcgggccatcaagactctgtttggagacgacgagcgggagatttcggaggagagcgac
gtcattcccacactggagccgctgcctgctaatgaggtcctaggtcatcagtctgtgttc
atcaacgagcctcgtctgtcagactttaagcaggttctgctgcgtgaagggatccaggcc
gagtttgtgggcggagttctggtgtgtaataatctggtggctgtcaggaggacggaagcg
ggccgcatctgtctggaaggctgtcattgtgatgactactacaggattcgtgagctgttg
tatcagcagtatgctgtagtttaa
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