Carassius gibelio (silver crucian carp): 127984581
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Entry
127984581 CDS
T08819
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127984581
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
127984581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
127984581
NCBI-ProteinID:
XP_052443247
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Position
B20:11518044..11522932
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AA seq
600 aa
AA seq
DB search
MDEQLTEGYSEPCGQCAAVDWGVSDEGQFFCKSCHNVIEKTREVVDVNTLHSKHSRISQI
TRPKKKRQENEREWLVCEGFQFILKHQAKALVSLGVCIKFETEVLWNFWKRYLQNTQQAF
TRNPVYTPKFTVFMKPQSDTESNAQSEQSYHTEAASEMSEEMSVSGYSSEAQSSVCSGSL
DAVVYQNIKGTKMHNLMTMPRTLALCYLALLWVREAVTLADLLRMVTERRVPYMNIHEAF
PTEMRLFGKDVQFFNVRYLPSYSLVHKEAVTLARILKLPSFPTVSQDCLLHPLPLTVRYL
LEANLPNELHVWVHKVIRQAAMGDSSFLTFDPSKEKPHLLRYDIQAVAVIIVTLKLLFKL
DDHVEWKLSEEAAKKKKKKVFKLKRWFDVVQPVLEQARKREEREEAKRQWGTTKPFITSL
QRKSLVLKKRRVAEHLEQKFQKYSDSAPEQSSSLTNPHASFHFSWGKEEGSDGPSMFNKR
LDCTHKKDGFKYLCNRKYWHPELRLCPRRMCGDHFSEIEPSLPRMYVWVLDLFSFILGVR
RAEVHKEVLNVERRFLKRNHQAKIQWTLTSCKKTKKRSKTATRVVRKKTHVHEENITDGE
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgaacaacttaccgagggatacagtgagccctgcggccagtgcgctgctgtagac
tggggagtgtccgatgagggtcagttcttctgcaagagctgccacaatgtgatcgagaaa
acgagggaggtggtggatgtgaacacacttcatagtaaacacagcaggatctcacaaata
acaagacccaaaaagaaaagacaagagaatgagcgagagtggctggtttgtgagggattt
cagttcatcttgaaacaccaggccaaggctttggtcagtctcggtgtctgcatcaagttt
gagacagaagttttgtggaatttctggaagagatacctgcagaacacacagcaagctttc
accagaaatccagtgtacactcctaagtttacagtgttcatgaagccacagagtgataca
gagtctaacgctcaaagtgagcagtcttatcacaccgaagctgcttcagagatgtcagaa
gagatgtcagtctcaggttactccagtgaagcacagtcatcagtatgttcagggtctttg
gatgctgttgtgtaccaaaatataaagggaacaaaaatgcacaatcttatgactatgcca
cggacactggccctgtgctatctggctctgctgtgggttcgagaagccgtcactctggca
gacttattgaggatggtcacagagagacgtgttccttacatgaacattcatgaggcattt
cccacggagatgagactgtttggaaaagatgtccagttcttcaatgttcggtaccttccg
tcctactcgctggttcataaagaagctgtgactctggctcggatcttgaaattaccctct
tttccaacggtttctcaggattgccttctccacccgttaccgctcactgtccgatatctg
ttggaggcaaacctcccaaatgaacttcatgtttgggtccacaaggttattagacaagct
gctatgggggacagctcttttctgacctttgaccccagcaaggagaagcctcatctcttg
cgctatgacattcaagcagtagctgtcatcattgtcaccttgaagctccttttcaagttg
gatgatcatgtggagtggaagttatctgaggaagcagccaagaagaagaaaaagaaagtt
ttcaagttaaaaaggtggtttgatgttgtacaacctgtcttggagcaagccagaaagagg
gaagaacgagaggaagccaaacgacaatggggaaccactaagcctttcattacatctttg
caacgcaagagcttggttctcaaaaaaaggcgcgttgctgaacacttggagcagaaattt
cagaagtatagtgactctgcaccagaacagtcgtcttccttaacaaaccctcatgccagc
tttcacttcagctggggaaaagaggaaggttcggatggacccagtatgtttaacaaacgt
ttggactgtacccataagaaagatgggttcaagtacctctgcaaccgtaaatactggcat
cctgaactgagattatgcccacgcaggatgtgtggggatcatttctcagaaattgagccc
agtttgcccaggatgtatgtgtgggtccttgatctcttctctttcattctgggagtccgt
cgggcagaagtgcacaaagaggtcctcaacgttgaacgtcgttttttgaaaaggaatcat
caggctaagattcaatggactttaacttcctgcaaaaagacgaaaaaaaggtcaaaaacc
gcaacccgtgttgttagaaagaaaacccatgttcatgaagagaatatcactgatggagaa
tga
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