Carassius gibelio (silver crucian carp): 127986109
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Entry
127986109 CDS
T08819
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127986109
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127986109
5.6.2.5 RNA 5'-3' helicase
127986109
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127986109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
nSTAND3
NAT10_TcmA_helicase
GLF
Motif
Other DBs
NCBI-GeneID:
127986109
NCBI-ProteinID:
XP_052444287
LinkDB
All DBs
Position
B21:complement(25801283..25821946)
Genome browser
AA seq
2318 aa
AA seq
DB search
MEKCLWCTTSLEAEGDAAIVAMLRRYSSGRLSEREMDSLNEDLGCCLECVVEYHRARDKV
PHLHKRLWEMEKARLVRLLGTILDKELEEDDIFIIEDDRVEPVTKILPAEFHDRLRSPLF
EVLKYPYLLCYRDLCDLVVKALSKLQDMKQSLTVFEKYQGIYLFLVHPNEQVRRWAIDTA
KTMKSVDRDSYYDLQEIFSCMFNVIEPGISLDFPDVDQESYSRGTIKTLPSHLYDSQNKK
NCWLGICMLLTQLSAEAMDSLFMGQFNIPLCILRTMDGLKNEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNTAFQTITGAASYVAEIRNIRQKTMGSMFKVEPEYDDNMVTCSQMV
YNCYASEKPNHASGLSSNSGVSSNYMIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFV
RSIMELSELNASYISEVIHYLCDKIRENRHMLTGQTIVYDKVSELFTRILIQIVELHSTE
GRMGILSRCAHKWVGEIVLCIIQSDETHGPPDRMGGIHGVSSTSYNLGIVRKLPASGGGI
GAIISDCVTLIRRLLKDGKRRSVPSAAHFLSLLNNQLRGVTNKRWDLTRSESDELQKCLL
RVVRSMPERSTSSPSVVPPPCGPSVEATTNTVISRNSVATLNQQPYEHQEAGPSRAGDES
SFIKKESIWNYKNWDLDEDFCSGLEVIIKAKKETLDPVSISQLSPVVQLERVKPDINQSL
KSAKEACGFGAAEDEEDDDEPLDIKLVRLTKSIHNVESGDSGDNNNAVEKMGNRFMSASK
ENVESSTIVISDDDSDNDERPNDILRSPKVCVLSESPGRDYDDLSESQVFEFETQQYVAS
AWDDSGFDASDLTKKPKSDQLLKPQVDETPREASPSSSETELIPDEDIERACQQAEDKIR
EQQQPQEPVDSFATSLSKASSTAESWDKFAKPKPVKSTKTTPSEKKQPKKPLIIDALAQK
SRRHSWKRSSTSQDVEEPSSSTTLCSPSSSSCSSVSSPYFSAPSSSNTPKVVPPKKVRKV
AEPESTAERLGLKKKERKAFDLSQRSLDGVAKLRCHGQKVQVEPQQKKRRVNRANKSSPQ
NHIVKSNKKLLGSQDIQFFRLSREKQANQRPATGVITTLAPKPADINQPGEMHLPKPTVA
SSEAGDIFPCPQPDSSFQRDNENAASGTNSAGDGAGNNKCVEPEYFQASETADAYMENEK
PAQEDDEEWMFLTQMEPTDMELCSQMEQFEEENGEELFLTQRDPIDMDIDTDSESDAPGP
TLTPKPIQTPIGGNDDHLFVKPGMSPISQKKAKPSTTKIYTPSSRSASLVLEMEKEAKPP
PAANVAKAKIPRLPPAVPPPKTFQPLHPPQLPMQLPSRHAPYAPELATSSKRSSNSEPPS
YKVYQRPEAPVYNPGPTVDQSQTFDLSILTQAILKWEYRMLDNYKSFGSPHDLCQLPLQK
VPVQFSSYLEYFNTLYPLLLINAFEEMASEWLKEGRVKLNLTFQGIEYSNRTASASFTAN
ISQETDMKQLYPKEDDLVLLWLPDNTGSYAHDEPNFHETHPHFGYVSRSNVSNRSSGSRP
ILNLTIQTRSNISSGNSQPVLCEVIGSLISIFREFRALCLLRNGPMLRPLLAPHASFFMH
TVDSPPDLDLPEFNRDQARAIACGLAMVKRTEKTPKFLLIHGPPGTGKSKTIGGLLYKLL
SSGINSAAPSGNIHAKSRRTRVLLCAPSNAAIDSLMKKVILIFKEKCRNINAPQGNCGDI
NLVRLGSERTISKSLKPFSLDHQTKARAQRAQQTAEADIHKRKEQLEQIIENLSQRCAKA
NKDSFEFKTLMEEKMQRLKEREGLGRQIKECRMRRQESQAVVLQNAHVICCTLSTSGSIV
LENAFRRLGHEPFSCVIIDEASQSKESETLIPMLYRSPAVILVGDPNQLPPTVVSQKAKE
FGFDQSLMARLCKSLYMSNPQLSPIVLLGVQYRMHPDICEFPSKYIYNSALKDDWQGQCR
QYDQEQTTMTKSELRLLRSLRGPCVCETAQKRCSLSWPFKPYKVFDVTDGIEKKERDSFS
NHKEVKLVLLLLKLLGEKQSVRVGVITPYNAQKQRILEAIRGSGIDNKHLQVEVNTVDGF
QGREMDCIIVSCVRASSETGSIGFVGNRQRMNVTITRAKFSLFILGHLRTLREQSDWGAL
IEDASIRKTIIKTMQKQFERDVRQILKPEREPPTRSLSYPPIGIPSAVTSPVTYAPVETD
PAPAPHLQHDTSSAPMPRLIPLECPNNPRMSDRPTDPRFAERRPIREQGPDRDGRGLPES
RRSTNRANSYEADSRSTGQSSRYSSRHSSSSPSRRHRR
NT seq
6957 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccacctccctggaggcggagggtgatgcagcgatagtc
gccatgctgcgtcgctacagctcaggacgtctgtctgagagagagatggactctctgaac
gaagacctcggctgctgtctggagtgtgtggtggagtaccatcgagccagagacaaggtc
cctcatctgcacaagcgtttgtgggaaatggagaaggctcgactcgtgcgtttgttggga
accatcctggacaaggagctggaggaggacgatatctttattatcgaagatgatcgcgtg
gagccggtgacgaagatcttgcctgcagaatttcacgaccgtctccgttctcctctgttt
gaagttctgaagtatccgtacttactttgctaccgtgatctgtgtgatttggtggtaaag
gccttgagtaagttgcaggatatgaagcagtctttgactgtgtttgagaagtatcaagga
atatatctgtttctcgttcatcccaacgagcaggtgcgccgctgggcaatcgatacagca
aagaccatgaagagtgtggatagggactcctactatgaccttcaagagattttctcctgc
atgtttaatgtcatcgaacctggaatatctttggactttccagatgtggatcaagagtct
tattcaaggggcaccataaaaacgctcccctctcacctctatgactcgcaaaacaagaag
aactgctggctaggtatctgtatgttactaacgcagctcagtgcggaggcaatggactct
ctgttcatgggacagtttaacatcccgctttgcatactccgcacaatggatgggttgaaa
aatgaggataacccagcttctgacccattctggccagccctccactgttttatggtaatt
ctggaccgacttggttctaagatctggggtcaggttgaccctaatacagcattccagaca
atcaccggagctgccagctatgttgcggaaattagaaacatccggcaaaagaccatgggc
agtatgtttaaagtggaacctgaatatgatgacaatatggtgacctgcagtcagatggtg
tacaactgttatgcctcagaaaaaccaaaccatgcatctggtttgtcgtccaacagtggg
gtttcaagcaactatatgatctatgaggatatgcagtccctggtcacagtgcttgattct
gaaatgggccagagcatgcgtgtatacggaagcacttttctgtggttcattccatttgtt
cgttccataatggaactttcagagctcaatgcttcctatattagtgaagtcatccactat
ctttgtgataagatacgagaaaatcggcacatgctaaccggacagacgattgtgtacgat
aaagtgtccgagttattcactcgtatccttattcaaattgttgagctacactctactgaa
ggacggatgggtatactttctcgctgtgcccacaagtgggttggggagattgtcttgtgc
atcatccaatcagatgaaacacatggaccaccagacaggatgggtgggattcacggagtc
agttcaacctcatacaaccttgggatagttcgaaaactgcctgcatctggaggaggcatt
ggtgctataatttctgactgcgtgacactgattcgacggctactgaaagacgggaaaagg
agatctgtcccaagcgcggcccactttttgagtttgctgaacaatcagttgcgtggagtt
acaaacaaacgatgggatttaacacgttctgaatctgatgagcttcagaagtgtttgtta
agagttgtccggtcaatgccagaaagatctacttcttcaccttctgttgttccaccacca
tgtggaccatcagtggaggcaactacaaacactgttatttccagaaattctgtggcaacc
ctaaatcagcaaccatatgagcaccaagaggcaggtccaagcagagcaggagatgaatct
agttttatcaaaaaggagtcaatttggaattataaaaattgggacttggatgaggatttc
tgcagcggtcttgaggttatcataaaggctaagaaggaaacccttgacccagtgtcaatt
tcacaactgagtccagttgttcagttggaacgcgttaaaccagatataaaccagtcctta
aaatcagctaaagaggcatgtggttttggagctgctgaggatgaggaggatgacgatgaa
ccccttgatatcaaattggttcgtctgacaaaatcaatccacaatgttgaatctggcgac
tccggagataacaataatgctgttgaaaaaatgggtaacaggttcatgagtgcttcaaag
gaaaatgtggagtctagtaccattgttatctctgatgatgattctgataatgatgaaagg
ccaaatgacatcctgaggtctccaaaagtttgtgtcctgtctgagagccccggtcgtgat
tatgatgatctcagtgaatcacaggtctttgagtttgagacccagcaatatgtggcatct
gcctgggatgattctggttttgatgcatcagacttgacgaagaagcccaaatcagaccaa
ctactcaaaccacaggtggatgaaactcctcgtgaagcatctccatcaagttcagagacc
gaacttattccagatgaagacattgagagggcttgtcagcaagcagaagataagatcaga
gaacagcagcagccacaagagccagtggattcatttgcaacttcactgtccaaagcatcc
agtactgcagagagctgggataaatttgccaaaccaaaaccggttaaaagcacaaaaaca
actccttctgaaaagaaacagcctaaaaagccattgataattgatgcccttgctcaaaaa
agcagacgccactcctggaaacgcagctcaacatctcaggatgtagaggaaccatcctct
tcaactactctatgctcaccttcctcttcatcctgcagctctgtttcctctccttatttt
tctgcccccagttcaagtaatacccctaaggttgttcccccaaagaaggtgcgtaaggtt
gctgagccagaatccacagcagagcgtttgggattaaaaaagaaggagaggaaagcattt
gatctttctcaacgctcgcttgatggtgttgctaaactgaggtgccatggtcagaaagtg
caggtagaaccacaacagaagaaaaggcgagtgaatcgagccaataagtcttctccacag
aatcatatcgtaaaaagcaacaagaaacttctgggatcacaagatattcagtttttcagg
ctaagtcgtgagaagcaggcaaatcagaggccagcaacaggagtcatcacaacattagct
cccaaaccagcagatatcaatcagccaggtgaaatgcacttaccgaaacctacagttgca
agcagtgaggctggtgatatctttccttgtcctcagccagattccagctttcagcgggat
aatgaaaatgctgcatcaggaaccaattctgcaggagatggggctggaaataataagtgt
gtagaacctgagtacttccaagccagtgagactgctgatgcctacatggaaaacgaaaaa
cctgctcaggaggatgatgaagaatggatgttcctcactcagatggaacccaccgacatg
gaactgtgctctcaaatggagcagtttgaggaagaaaatggtgaagaactctttcttacc
cagagagaccctatagacatggacattgatacagacagtgagtcagatgccccagggcca
accttgacccctaaacctattcagactcctattggtggaaatgatgatcatttgtttgtg
aagcctggcatgtcacctatatctcagaaaaaggccaaaccttctaccacaaaaatatac
acccccagctcccgcagtgcctcgcttgtccttgaaatggaaaaagaagccaagcctcct
cctgctgcgaatgttgctaaagcgaagattccccgactgcccccagcagtgccacctccg
aaaacatttcaaccactccatcctccacaactcccaatgcaacttccttcacgacacgct
ccatatgctcctgagttggccactagttctaaaagaagctccaactcagagccaccatct
tacaaggtataccaaagacccgaggctccagtttacaatccaggacccacagtggatcaa
agccagacgtttgacctttcaatcttgacccaagcaatccttaaatgggaatataggatg
cttgacaattacaaatcatttgggagtccacacgatctgtgccaactaccgctgcagaaa
gtgccagttcagttttctagctacttggagtacttcaacaccttgtaccccctgctgcta
attaatgcatttgaagagatggcgagtgaatggctcaaagagggcagagtcaagcttaac
ctaacatttcagggaatagaatacagcaatcgcacagctagtgccagcttcacagcaaac
atttctcaggaaactgatatgaaacaactgtacccaaaagaagatgacctggtgctactt
tggttgcctgacaacactgggtcatatgcccatgatgaaccaaatttccatgaaacgcat
cctcattttggttatgtgtctcggtccaatgtgtccaacagaagttcaggttccaggcca
attctcaacttgacgattcagacacgtagtaatatatcttcagggaattcccaacctgtg
ctctgtgaagttatcggatcattgatcagcatattccgggagttccgtgcactgtgtttg
ctgcggaatggaccaatgttgcgacctctacttgctccacatgcatcttttttcatgcac
actgtggacagcccaccggacctggatttaccagagttcaacagggaccaagcaagagca
atagcttgtggtcttgccatggtaaagagaacagagaagaccccaaaatttctccttatt
catggtcctccaggaaccgggaagagtaaaacaattggtggcctgttgtacaaactacta
tcttcgggtattaacagtgctgctccttcggggaacattcatgccaagtctcgacggaca
cgagttcttctctgtgctccctctaatgctgccattgacagtctgatgaagaaggtcatt
ttgatatttaaagagaaatgccgaaacatcaacgcacctcaaggtaactgcggggatata
aacctggtacgattgggaagtgaaagaaccatctcgaagtcattaaaacctttcagcctc
gaccaccagactaaagctagagcacagcgagctcagcaaactgcagaagctgacatacac
aaacgcaaggagcaactggaacaaatcattgaaaatctctcccagcgatgtgcaaaagcc
aataaggattctttcgagttcaagacgttgatggaggagaagatgcagcgcctgaaagag
agagaaggactgggtcggcagattaaagagtgtcgcatgaggcgacaggagagtcaagct
gttgtgctgcaaaacgctcatgtgatctgctgcacgctcagcaccagtggaagtattgtc
ctcgagaatgccttccgtcgcctcggacatgaaccattcagctgcgtcatcattgatgag
gctagtcagtctaaagaatctgagactctgatccccatgctgtaccgaagtcctgctgta
atcctcgtcggtgatcccaaccagcttccaccaacagttgtctctcagaaagcgaaggag
tttggcttcgaccagtctcttatggcaaggttatgcaaaagtctttatatgtcaaacccg
caactctctccaatcgtcctgctcggcgtgcagtaccgcatgcacccggacatctgcgaa
ttcccctccaagtacatctacaacagcgctctcaaggacgactggcaggggcagtgcagg
cagtatgatcaggagcagacgactatgactaagtctgaattgagactcctccggtcactg
agaggaccgtgcgtgtgtgagacggctcagaagcgctgttccctcagctggcccttcaag
ccctacaaagtgttcgacgtgacggatgggatagagaagaaggagagagattcattttcc
aatcacaaagaagtcaagctggtcttgctgctgttgaagctgctgggtgagaagcagtca
gtgcgagtgggcgtcatcacaccctacaacgcccagaaacaacgcatactggaagccatc
aggggttcaggcatcgacaacaagcatcttcaggttgaagtcaatacagtggatggcttt
cagggcagagaaatggactgcatcattgtgtcttgtgtgagagccagcagtgaaacaggc
tccattgggtttgttggaaatcggcagagaatgaatgtaaccatcaccagagccaaattt
agtctctttattctgggacatttacgcacactcagggaacaaagtgattggggagcattg
attgaggacgctagtatacgtaaaacgatcatcaaaactatgcaaaaacaatttgaaaga
gatgtcaggcagattcttaaaccagaacgagagccgccgacccgcagtctctcttatccc
ccaattgggataccgagcgctgtgacctcacctgtgacatatgcacctgtggaaacagac
cccgcccctgcgccccaccttcaacatgatacgagcagtgcgccaatgccacggctaata
cccttggaatgccctaataacccacggatgagcgacaggcccacagacccacgttttgca
gagcgccggccaatcagagaacagggaccggacagagatgggcggggcttaccagagtcc
cgccgttcaacaaacagggctaattcgtatgaagccgactctagaagtacaggccaatct
tccagatactcttcaagacacagcagctcttcaccatcaagacgacacaggagataa
DBGET
integrated database retrieval system
