KEGG   Carassius gibelio (silver crucian carp): 127995629
Entry
127995629         CDS       T08819                                 
Name
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    127995629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cgib03400]
    127995629
Enzymes [BR:cgib01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127995629
DNA repair and recombination proteins [BR:cgib03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     127995629
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 127995629
NCBI-ProteinID: XP_052447847
LinkDB
Position
A5:14131490..14142750
AA seq 1008 aa
MPSLWLGRAVRTLSRSSLPKLCKETSFRAALNHQSLQCPRTLIFSWGFVSSPSGIFFCVP
QIRQFSLSSGSYFHVSWPEWRSERPVMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLEKARATTKKIDDITELEGWEELQDEDKLLINKHV
SDLAAKASATPKKKVQAKLNNSGQLSAPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPTQGSALSAQLCDPNHKDCLLREFRKLCALVAEKSGYNAKTEIIRDFLIRGSGGDKFRG
DLYLTVKFLLPGVVKNVYNLNDKQIAKLFSRILNCSQDEMVQDLEQGDVSETVRVFFEQS
KFFPPSAKSLLTIQEVDASLSRLSQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDLK
INSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSVEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNHFSYFSRSLKPVLPHKVAHF
KDFIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GISLMDKPLCERRKFLHDNMVEVPNRILISEMKHVTRAADLAEMITRVIREGLEGLVLKD
IKGYYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESK
KWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFVIRDPGKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVT
AGPSKSSRNDKSSSGGESGGSSPSASSTAIKTKNGHTPKAKAVKTESSSPAVKRKLPTEK
QDAKKIKTEPVHSNEQSKLQTIQTTDPKNEKTLLDIFTGVKLYLPESLQDFEKLRRYFLA
YDGDLVPEYDSVSATHSLGEPEDDGLVQRVTSNWIWECIRKRRVVPPS
NT seq 3027 nt   +upstreamnt  +downstreamnt
atgcccagtctttggcttggcagggcagtaaggacactcagcagatcatctctgccaaag
ctttgtaaggaaacttccttcagagcagcactaaatcatcagtctctccagtgcccgagg
actcttatattttcgtggggctttgtgtccagccccagtggcatctttttctgtgtgcca
caaattcgacagtttagtctcagctccggctcttatttccatgtttcttggcctgagtgg
cgaagtgaacgaccagtcatggcagagcagagatactgtgtggaatatgccaaacgtggc
acggctggctgcaagaaatgcaaagacaagatcatgaaggggctggtccggattggcaag
atagtgccaaacccttttagtgagtctgccggggaaatgaaggagtggtaccatgtgaag
tgcatcttcgagaagcttgagaaagcgcgcgccaccacaaagaagatcgatgacatcaca
gagctggaggggtgggaggaacttcaggacgaggataaactgctaatcaataaacatgtt
tcagatctggcagccaaagccagtgcaaccccaaagaagaaagtgcaagcaaagttaaac
aacagtgggcagctgtcagcaccgttggctgatccaacagtcaatgctcctcgcaagttt
tctggcttcacagctaccaaggcaggttcctcttcctccagtcctggaccatctccagcc
aaacccactcagggtagcgctttatcagctcagctgtgtgaccccaaccataaagactgc
ttactgcgggagttccgcaaactttgtgccttagtcgcagagaagtctggctataacgcc
aagacagagatcatcagagacttcttaataagaggctctggtggagacaaattccgtgga
gatttgtacctgacagtgaagtttctcctcccaggagtagttaagaatgtctacaacctc
aatgacaaacagattgccaagcttttcagccgcatattaaattgcagtcaggatgagatg
gtgcaagacttggaacagggagatgtttctgagacggtgagggtatttttcgagcagagc
aagtttttccctccatcagccaagagtcttctgactatccaagaggtggatgcttcgctg
agccgtctatcccaactcacaaaggaggatgatcagcaggcagagctgcaggacattgct
aaaaagtgcaccggaaatgatttgaagtgttacattcgtttggtcaaacatgatctgaaa
atcaactcgggggctaaacatgttttggatgctgtggaccccaacgcttatgatgccttc
aaagcctcccgtaaccttggtgatgtaattgaccgggtgctaaggaaccaacaggacgca
tctaatgggacagggcccagaaagatcctcagcgtggaggcgtctctgatgacccccgta
cagccaatgctggcagaagcatgtaagtccattgagtatgccatgaagaagtgtcctaat
gggatgtattctgagatcaagtatgatggtgagcgtgtgcaggtccataagaacggcaat
cacttcagttacttcagtcgaagtctcaaaccagtactcccacacaaggtggcccatttt
aaagatttcataccgcaggcgtttcccggtggccatagcatgatccttgatgctgaagtt
cttcttattgatacaaagactagcaaaccactgccttttgggactcttggagtacacaag
aaagcagctttccaggatgcccaagtgggtctgttcgtgttcgactgcatttattttaat
ggtatcagtctcatggacaagcctctctgtgagagaagaaagtttctccatgacaatatg
gtggaagttcctaacaggattcttatctcagaaatgaagcatgtcacgagagctgctgac
ctggcagaaatgatcacacgtgtcatcagggaaggactggaggggttggttctgaaggat
atcaagggatattatgaaccaggcaaacggcactggttgaaggtgaagaaggactatctg
aatgaaggagcaatggcagacaccgctgaccttgtggtgcttggagctttctatgggaaa
ggctcaaatggtggaattatgtccagtttcctcatgggatgctatgacccagaatccaag
aagtggtgcactgtgaccaagtgttcaggaggctatgacgacgccacattagccagatta
cagaaggagttggacgtaattaaaattggcaaggatccaagcaagatcccaggatggttg
aagatcgtcaagaactattacccagatttcgttatccgagatccaggaaaagcaccagtt
tgggaaataacaggagcagagttttccaaatcagaaatgcacactgcagatggcatatcc
attcgcttcccgcgatgcactcgaatgcgagacgacaaggattggaagactgccactaac
cttcagcagctcaaggagctgtatcgtatttcaaaggagaactgtgattttgaggtgaca
gctggtccgtccaaaagtagccgaaatgacaagagctcctcaggaggcgagagtggagga
agctctccttctgcatcttccacagctatcaagaccaaaaacggtcatactcccaaagca
aaggcagtgaaaaccgaatcatcttcaccagcagttaagaggaaattacccacagagaaa
caagatgccaagaagataaaaacagaacctgttcacagcaatgaacaaagcaaattgcag
accattcaaacaactgacccaaagaatgaaaagacactactggacattttcacaggtgtg
aagctctacctcccagagtccttgcaggactttgaaaagcttcggcgctatttcctagca
tacgatggagatctggtgcctgagtatgactctgtttcagccacacattcactgggagag
ccagaggacgatggtctggtccagagggtcacctccaactggatctgggaatgcatccga
aagaggagggtggtccctcccagctga

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