KEGG   Carassius gibelio (silver crucian carp): 128011200
Entry
128011200         CDS       T08819                                 
Name
(RefSeq) exosome component 10 isoform X1
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    128011200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgib03019]
    128011200
Messenger RNA biogenesis [BR:cgib03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     128011200
SSDB
Motif
Pfam: DNA_pol_A_exo1 PMC2NT HRDC
Other DBs
NCBI-GeneID: 128011200
NCBI-ProteinID: XP_052449324
LinkDB
Position
B23:9934841..9944900
AA seq 901 aa
MAASSSSAAVVKQSDLSSPCEETEEESEFCPGFKDVDAFVKHGLGAVVSATKASAALPAA
GDEFDLYRSFPSFQQFCASQGDQLLHCMSQIMQYHGCRSHMRDRNRLTGLEDRFDLVVDS
NDAILEKVGILLDEASGVSRTQQPVMPAGYQPPKIVVSSWNRRGGERRDETFHLLHAKNI
QRPQLKFKEKVDNSNTPFVSKIFIKPNAVKPLPTYFANKHIRKERPEDLDVPAALADFIH
QQRTQEHVDDMFSHPYQYELDHLVMPESLKCKPDVQMYKPLAECSCQFINTLDELVALNE
KLAKVSEFAVDLEHHSYRSFLGITCLMQISTREEDFIIDTLELRSQMYILNETFTDPAIV
KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRNSLDHLLKVYCSVNSDKRYQLA
DWRIRPLPDEMLKYAQADTHYLLYVYDRVRTDLYDTGNGKPTLIQQVWDKSRDLSLKKYV
KPIFTEDSYMELYRKQKKSFNTQQLAAFRLLYAWRDKLGREEDESTGYILPNHMMMKIAD
ELPKEPQGIIACCNPTPPLVRQQINELHQLLKQARETPLLKAEVLAEKRKSMTPKRKPQT
ILFGPHDTSRSSESDFLDLSSFETPTKPGVLFSEEEDESMNQEEKALHGLIASAKISLFA
KDDEEEAAPAHLTVAQQKAHSIMGSFENPFRMYLPSKDIHISKNAKYDPSSKIYEIHNRW
KLQSIEQQQKEAQEKQQAKEQAKKAQEERKKAKLSYQESLQNVHTVREQVAEAKQAGQKR
ERAASDAGEDSLKPKMKVSKTASETPVADQSTKPAQKKKKQKKAQEPEVPEQDFKPFDYS
QSSFKVFDGKSKESSQFDPNRQARGPKQKKKGPKKNAVGGRSMSYVPDKSDRGFRHNWPK
R
NT seq 2706 nt   +upstreamnt  +downstreamnt
atggctgcctcctcgagtagtgctgctgttgttaaacagagtgatctttcttcaccatgt
gaagaaacagaggaggaatcggagttttgtccgggttttaaggatgtcgacgcatttgtc
aagcacggtctgggagcggtggtctctgccacgaaagcgtctgcagctcttccagcagcc
ggagatgagtttgatctgtaccgcagcttcccttccttccagcagttctgcgcctcacag
ggagaccagctcttacactgtatgagtcagatcatgcagtatcatggctgtcggtctcac
atgagagacaggaacagactgaccgggctggaggacaggtttgacctggtggtggactca
aacgatgccatccttgagaaagtgggcatcctcctggacgaggcgtccggtgtgagccgc
acacagcagccggtgatgcctgcaggatatcagccgccaaaaatcgtggtgtccagctgg
aaccgcaggggaggagagcgcagggatgagacctttcaccttctacatgctaaaaacatt
cagcggccacagctcaagttcaaggagaaagtggacaacagcaacactccgtttgtctcc
aagattttcatcaaacccaatgcagttaagcctctgcccacatattttgccaacaaacac
atccgtaaggagcgaccggaggatctggatgttcctgctgcgctggctgatttcatccat
cagcagagaactcaggagcatgtggacgacatgttttctcacccttatcaatatgaattg
gatcatctggtcatgccggagagtctgaagtgtaaacctgacgtccagatgtataaacct
cttgccgagtgctcttgtcagttcatcaacactttagatgagcttgtcgctctgaacgag
aagctagccaaggtgtcggagttcgctgtggacctggagcatcactcctacagaagcttt
ctgggaatcacgtgtctgatgcagatatccacacgagaggaggatttcatcatagacacg
ctggagctacgcagtcaaatgtacatcttaaacgagactttcaccgaccctgccatcgtg
aaggtgtttcacggggccgactctgacatcgagtggctacagaaggactttggtctttat
gtggtcaacatgttcgacacccatcatgctgcacgctgcctaaacctcggccgaaactcc
ctcgaccatctcctgaaagtctactgcagtgtgaactctgataaacgctaccagctggca
gactggaggatacgaccgttgccggatgagatgttgaagtacgctcaggcagacactcac
tatctgctgtacgtgtacgatcgagtccggactgacctgtatgatacaggcaacggcaaa
cccaccctcattcagcaagtctgggataaaagcagagacctgtcgctcaagaaatacgtg
aagcctatttttacggaggactcgtacatggagctgtaccgcaagcagaagaagagcttc
aacacacagcagctggcggccttcagactgctgtacgcctggagagataaactgggacga
gaggaggatgagagcactggatatatcttacccaaccacatgatgatgaagatcgccgat
gagcttccaaaggagcctcagggcatcatcgcgtgctgtaaccccactccacctctagtg
cgccagcagatcaatgagcttcatcagctgctcaaacaggctcgagagacccctttactc
aaggcagaggtacttgctgaaaagaggaaatcgatgacccctaaaagaaagccacagacg
attttattcggaccgcatgacacctcccgctcgtctgaaagtgatttcctggacctctcc
tctttcgaaactccaaccaaaccgggagtgctgttttcagaggaggaggatgaaagcatg
aaccaagaggaaaaggccttgcacggcctgatagcttcagcaaaaatcagcctcttcgcg
aaggacgacgaggaggaggcagctcctgctcatctgactgtggcacaacaaaaagctcac
agcatcatggggtcctttgagaaccccttcagaatgtatttaccatcaaaggacattcac
atttccaagaatgccaagtatgacccctcttcaaagatttatgagattcataaccggtgg
aagttacagagtattgagcagcagcagaaggaggcgcaggagaaacagcaggcgaaagaa
caggccaagaaagctcaagaggaacgaaagaaagccaaactgagctaccaggagtcgctg
caaaacgttcacactgtccgggagcaagtagcggaagcaaagcaggctgggcagaaaaga
gagcgagctgccagtgatgctggtgaagacagtctcaaaccaaaaatgaaagtctcaaag
actgctagtgagacacctgtggccgatcagtcgacaaaacctgctcagaaaaaaaagaaa
cagaaaaaagctcaagagccggaagttcccgaacaagactttaaaccttttgactacagc
cagtcaagttttaaagtatttgatggcaaatcaaaagagagttcacagtttgatccaaac
agacaagcacgtggacccaagcagaagaaaaaaggaccaaagaaaaacgctgtgggaggc
aggagcatgtcttatgtccctgacaaatctgacagagggtttcgtcacaactggcccaag
agatag

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