Carassius gibelio (silver crucian carp): 128011200
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Entry
128011200 CDS
T08819
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128011200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128011200
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
128011200
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
128011200
NCBI-ProteinID:
XP_052449324
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All DBs
Position
B23:9934841..9944900
Genome browser
AA seq
901 aa
AA seq
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MAASSSSAAVVKQSDLSSPCEETEEESEFCPGFKDVDAFVKHGLGAVVSATKASAALPAA
GDEFDLYRSFPSFQQFCASQGDQLLHCMSQIMQYHGCRSHMRDRNRLTGLEDRFDLVVDS
NDAILEKVGILLDEASGVSRTQQPVMPAGYQPPKIVVSSWNRRGGERRDETFHLLHAKNI
QRPQLKFKEKVDNSNTPFVSKIFIKPNAVKPLPTYFANKHIRKERPEDLDVPAALADFIH
QQRTQEHVDDMFSHPYQYELDHLVMPESLKCKPDVQMYKPLAECSCQFINTLDELVALNE
KLAKVSEFAVDLEHHSYRSFLGITCLMQISTREEDFIIDTLELRSQMYILNETFTDPAIV
KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRNSLDHLLKVYCSVNSDKRYQLA
DWRIRPLPDEMLKYAQADTHYLLYVYDRVRTDLYDTGNGKPTLIQQVWDKSRDLSLKKYV
KPIFTEDSYMELYRKQKKSFNTQQLAAFRLLYAWRDKLGREEDESTGYILPNHMMMKIAD
ELPKEPQGIIACCNPTPPLVRQQINELHQLLKQARETPLLKAEVLAEKRKSMTPKRKPQT
ILFGPHDTSRSSESDFLDLSSFETPTKPGVLFSEEEDESMNQEEKALHGLIASAKISLFA
KDDEEEAAPAHLTVAQQKAHSIMGSFENPFRMYLPSKDIHISKNAKYDPSSKIYEIHNRW
KLQSIEQQQKEAQEKQQAKEQAKKAQEERKKAKLSYQESLQNVHTVREQVAEAKQAGQKR
ERAASDAGEDSLKPKMKVSKTASETPVADQSTKPAQKKKKQKKAQEPEVPEQDFKPFDYS
QSSFKVFDGKSKESSQFDPNRQARGPKQKKKGPKKNAVGGRSMSYVPDKSDRGFRHNWPK
R
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcctcgagtagtgctgctgttgttaaacagagtgatctttcttcaccatgt
gaagaaacagaggaggaatcggagttttgtccgggttttaaggatgtcgacgcatttgtc
aagcacggtctgggagcggtggtctctgccacgaaagcgtctgcagctcttccagcagcc
ggagatgagtttgatctgtaccgcagcttcccttccttccagcagttctgcgcctcacag
ggagaccagctcttacactgtatgagtcagatcatgcagtatcatggctgtcggtctcac
atgagagacaggaacagactgaccgggctggaggacaggtttgacctggtggtggactca
aacgatgccatccttgagaaagtgggcatcctcctggacgaggcgtccggtgtgagccgc
acacagcagccggtgatgcctgcaggatatcagccgccaaaaatcgtggtgtccagctgg
aaccgcaggggaggagagcgcagggatgagacctttcaccttctacatgctaaaaacatt
cagcggccacagctcaagttcaaggagaaagtggacaacagcaacactccgtttgtctcc
aagattttcatcaaacccaatgcagttaagcctctgcccacatattttgccaacaaacac
atccgtaaggagcgaccggaggatctggatgttcctgctgcgctggctgatttcatccat
cagcagagaactcaggagcatgtggacgacatgttttctcacccttatcaatatgaattg
gatcatctggtcatgccggagagtctgaagtgtaaacctgacgtccagatgtataaacct
cttgccgagtgctcttgtcagttcatcaacactttagatgagcttgtcgctctgaacgag
aagctagccaaggtgtcggagttcgctgtggacctggagcatcactcctacagaagcttt
ctgggaatcacgtgtctgatgcagatatccacacgagaggaggatttcatcatagacacg
ctggagctacgcagtcaaatgtacatcttaaacgagactttcaccgaccctgccatcgtg
aaggtgtttcacggggccgactctgacatcgagtggctacagaaggactttggtctttat
gtggtcaacatgttcgacacccatcatgctgcacgctgcctaaacctcggccgaaactcc
ctcgaccatctcctgaaagtctactgcagtgtgaactctgataaacgctaccagctggca
gactggaggatacgaccgttgccggatgagatgttgaagtacgctcaggcagacactcac
tatctgctgtacgtgtacgatcgagtccggactgacctgtatgatacaggcaacggcaaa
cccaccctcattcagcaagtctgggataaaagcagagacctgtcgctcaagaaatacgtg
aagcctatttttacggaggactcgtacatggagctgtaccgcaagcagaagaagagcttc
aacacacagcagctggcggccttcagactgctgtacgcctggagagataaactgggacga
gaggaggatgagagcactggatatatcttacccaaccacatgatgatgaagatcgccgat
gagcttccaaaggagcctcagggcatcatcgcgtgctgtaaccccactccacctctagtg
cgccagcagatcaatgagcttcatcagctgctcaaacaggctcgagagacccctttactc
aaggcagaggtacttgctgaaaagaggaaatcgatgacccctaaaagaaagccacagacg
attttattcggaccgcatgacacctcccgctcgtctgaaagtgatttcctggacctctcc
tctttcgaaactccaaccaaaccgggagtgctgttttcagaggaggaggatgaaagcatg
aaccaagaggaaaaggccttgcacggcctgatagcttcagcaaaaatcagcctcttcgcg
aaggacgacgaggaggaggcagctcctgctcatctgactgtggcacaacaaaaagctcac
agcatcatggggtcctttgagaaccccttcagaatgtatttaccatcaaaggacattcac
atttccaagaatgccaagtatgacccctcttcaaagatttatgagattcataaccggtgg
aagttacagagtattgagcagcagcagaaggaggcgcaggagaaacagcaggcgaaagaa
caggccaagaaagctcaagaggaacgaaagaaagccaaactgagctaccaggagtcgctg
caaaacgttcacactgtccgggagcaagtagcggaagcaaagcaggctgggcagaaaaga
gagcgagctgccagtgatgctggtgaagacagtctcaaaccaaaaatgaaagtctcaaag
actgctagtgagacacctgtggccgatcagtcgacaaaacctgctcagaaaaaaaagaaa
cagaaaaaagctcaagagccggaagttcccgaacaagactttaaaccttttgactacagc
cagtcaagttttaaagtatttgatggcaaatcaaaagagagttcacagtttgatccaaac
agacaagcacgtggacccaagcagaagaaaaaaggaccaaagaaaaacgctgtgggaggc
aggagcatgtcttatgtccctgacaaatctgacagagggtttcgtcacaactggcccaag
agatag
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