Carassius gibelio (silver crucian carp): 128011228
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Entry
128011228 CDS
T08819
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128011228
03041 Spliceosome [BR:
cgib03041
]
128011228
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128011228
Spliceosome [BR:
cgib03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128011228
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
128011228
NCBI-ProteinID:
XP_052449374
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All DBs
Position
A5:29810695..29817477
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AA seq
343 aa
AA seq
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MMMMMDEDQPKTLYVGNLSRDVTEALILQVFSQIGPCKNCKMIIDTAGNDPYCFVEFYEN
RHAAAALAAMNGRKILGKDMKVNWASMPGSQKKDTSNHFHVFVGDLSPEISTDDVRAAFA
PFGKISDARVVKDLATGKSKGYGFISFINKWDAENAIQQMNGQWLGGRQIRTNWATRKPS
APKSNNEAASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF
PEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHIVKCYWGKETADVRSMQQMQMPQNKPTYA
AQPYGQWGQSYGNGQQMGQYVPNGWQMPTYGVYGQAWNQQGYK
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatggacgaggaccagcccaagacactgtatgtcgggaacctctccagg
gacgtcacggaggccctcatcctgcaagtgttctcccagatcggcccctgcaagaactgt
aaaatgataattgatacggcaggaaatgacccgtactgctttgtggagttctatgagaac
agacatgcggctgcagctttggctgccatgaacggcaggaagatcttaggaaaggatatg
aaagttaactgggcctcaatgccgggcagtcagaagaaagacacaagcaatcatttccac
gtgtttgtcggtgacctgagcccagaaatctcaacagatgatgtcagagcagcctttgct
ccgtttggaaaaatatctgatgcccgtgtggtgaaggatctggccacgggaaaatctaaa
ggatatggtttcatctcatttattaataaatgggatgcagaaaatgctattcagcaaatg
aatggtcagtggctgggaggcagacagatcagaacaaactgggccacaaggaagccatca
gctcctaagtcaaacaatgaagcagccagcagcaaacacttgtcctatgaggaggttctg
aaccagtcgagtcctagtaactgcaccgtctattgtggtggcattgcttctggcctttca
gatcagctgatgagacagactttctctccattcgggcagataatggagatcagggttttc
ccggagaaaggctactcatttgtgaggtttgactctcatgagggtgctgcccatgccata
gtgtctgtaaatgggacctgcattgagggccacattgtaaagtgctactggggcaaagaa
acggctgatgtaagatccatgcaacagatgcaaatgccccagaataaacccacctatgcg
gcccagccttacggacagtggggtcagtcatatggcaatggtcagcagatgggtcagtat
gtgcccaacggctggcagatgcccacttacggcgtctatgggcaggcctggaatcagcag
ggatataaataa
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