Carassius gibelio (silver crucian carp): 128011277
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Entry
128011277 CDS
T08819
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128011277
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128011277
09142 Cell motility
04820 Cytoskeleton in muscle cells
128011277
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
128011277
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Others
128011277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128011277
NCBI-ProteinID:
XP_052449465
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All DBs
Position
B23:complement(4534813..4554075)
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AA seq
679 aa
AA seq
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MAVFSALHLLVLFQLLTSSLAQQRPGPRGAPGVPGPLGPPGKDGIDGKPGPAGLPGKPGP
KGKAGKPGAAGSPGLHGLPGVDGLTGPDGPAGKDGPPGAAGDPGPPGPDGPPGRGRPGAL
GLAGANGLPGGPGPKGPPGPEGLPGLPGLPGPDGPPGLPGTLPEGNGDLLCPAICPPGPP
GPPGMPGFKGHTGHKGSKGELGKDGEKGDQGPPGPPGIPGTVGLQGSRGLRGLQGPVGAV
GDRGLPGFRGKPGVAGIIGKTGDAGERGPQGFRGPKGEIGKIGPKGLPGGVGPKGEPGIP
GRDGKDGTQGLDGEKGDAGRPGVAGEKGPNGLPGLPGKAGAKGAKGGVGGPGKMGEAGPS
GEPGIPGEIGVPGERGEAGPRGVTGGIGLAGNPGPQGVKGFQGVKGALGDPGLPGPTGIR
GGFGERGPVGAGGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGESGKRGELGAKGVVGPQ
GETGARGAPGKPGPMGFQGEQGFPGVPGKTGVPGKLASEQHIRELCGSMIDDQIAQLAAN
LRRPLAPGAVGRPGPPGPPGKQGEVGSIGHPGSLGPPGYRGLPGDLGDPGPRGDVGEPGD
KGPVGKAIEGPAGDQGEPGLPGVHGIVKDGRDGAPGDPGEPGEAGRAGRPGHQGSPGICD
TSACQGAVVHGKSSNPKNH
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgttctcagcgcttcatctgctcgtcctcttccagctgctcacgtcgtctctg
gctcagcaaaggccgggtcctcggggtgcaccaggagtgccaggaccactgggaccccca
gggaaagacggcatcgacggtaaacctggtcctgctggacttcctggaaagcctgggccg
aagggtaaagcaggtaaacctggggccgcagggagcccgggactgcatggcctccccggt
gtggatggtttgaccggtccggacggtccagctggcaaggacgggccgccaggagcagca
ggtgacccaggaccccccggaccagacggaccccctggcagaggcagaccaggagctctg
ggtcttgctggagctaatggactgccaggtggaccaggacctaagggtccgccggggccc
gagggtcttccaggactccctggtcttccaggcccagacggacctcctggactcccagga
acacttcctgaaggcaatggagatctgctgtgtccggccatctgtcctccgggtcctcct
ggaccgccgggaatgcctggattcaagggtcacacaggtcataaagggagtaagggggag
ctggggaaagatggagagaagggggatcaggggccaccgggaccgccgggaatcccgggg
acagtgggcttacagggctctcgagggctgagaggactgcaggggccggtgggagcagta
ggagacagaggactgccgggcttcagaggaaaacctggggtcgctggcatcattggaaaa
actggtgatgctggtgagagaggaccgcaaggtttcagaggacccaaaggagagataggg
aaaataggccccaagggactccctggaggtgtaggacctaaaggagaaccgggcatcccg
ggcagggacgggaaggatggcacccaagggctggacggtgaaaagggggatgctgggaga
cctggagtagctggtgagaagggacctaacggcctgcctggtttgccgggaaaagctggt
gcaaaaggtgccaaaggaggagttggcggtccaggaaagatgggagaagcagggccgtct
ggagagccaggtatacctggggagatcggcgtcccgggagagagaggagaggctggaccc
cggggggtgactggcggcattggtctagctggaaaccctggaccacaaggtgttaaagga
ttccagggtgtgaaaggggctttaggagaccccggtctgcctggtccgactggaatcaga
ggcggcttcggtgagcggggtccagttggagctggagggcctaaaggagacatgggagtt
gctggaagtgatggtttgccgggagagaacggggagccgggtccgtatggtcccgtcgga
cagaagggagagtccggtaagcgtggcgagcttggagccaaaggagttgtaggaccacag
ggagagaccggagccagaggtgcacctggaaaaccaggaccgatgggattccaaggagag
caaggttttccaggggttcctgggaagactggtgttcctggcaaactggctagtgagcag
cacatcagagaactgtgtggctccatgattgatgatcagatagctcagctcgctgctaac
ctgagaagacctctggctcctggtgctgtgggacggcctggaccaccggggcctccagga
aagcaaggagaagttgggtccatcggtcaccctggatccctcggcccaccaggttataga
ggactgccaggagatctcggtgatcctggtcctcgaggggacgtcggcgagccaggagac
aagggtccagtgggtaaagccatcgaagggcccgctggagaccagggtgaaccgggtctg
cccggcgtgcatggcatcgtcaaagacggccgtgacggagcacctggagatccaggagag
cctggagaagcaggacgagccggcagaccgggacaccagggatcacccggaatctgtgac
acatcagcgtgccaaggagccgtggttcacgggaagtcctccaaccccaagaaccattaa
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