KEGG   Carassius gibelio (silver crucian carp): 128011277
Entry
128011277         CDS       T08819                                 
Name
(RefSeq) collagen alpha-3(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib04510  Focal adhesion
cgib04512  ECM-receptor interaction
cgib04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128011277
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128011277
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128011277
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cgib00535]
    128011277
Proteoglycans [BR:cgib00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   128011277
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 128011277
NCBI-ProteinID: XP_052449465
LinkDB
Position
B23:complement(4534813..4554075)
AA seq 679 aa
MAVFSALHLLVLFQLLTSSLAQQRPGPRGAPGVPGPLGPPGKDGIDGKPGPAGLPGKPGP
KGKAGKPGAAGSPGLHGLPGVDGLTGPDGPAGKDGPPGAAGDPGPPGPDGPPGRGRPGAL
GLAGANGLPGGPGPKGPPGPEGLPGLPGLPGPDGPPGLPGTLPEGNGDLLCPAICPPGPP
GPPGMPGFKGHTGHKGSKGELGKDGEKGDQGPPGPPGIPGTVGLQGSRGLRGLQGPVGAV
GDRGLPGFRGKPGVAGIIGKTGDAGERGPQGFRGPKGEIGKIGPKGLPGGVGPKGEPGIP
GRDGKDGTQGLDGEKGDAGRPGVAGEKGPNGLPGLPGKAGAKGAKGGVGGPGKMGEAGPS
GEPGIPGEIGVPGERGEAGPRGVTGGIGLAGNPGPQGVKGFQGVKGALGDPGLPGPTGIR
GGFGERGPVGAGGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGESGKRGELGAKGVVGPQ
GETGARGAPGKPGPMGFQGEQGFPGVPGKTGVPGKLASEQHIRELCGSMIDDQIAQLAAN
LRRPLAPGAVGRPGPPGPPGKQGEVGSIGHPGSLGPPGYRGLPGDLGDPGPRGDVGEPGD
KGPVGKAIEGPAGDQGEPGLPGVHGIVKDGRDGAPGDPGEPGEAGRAGRPGHQGSPGICD
TSACQGAVVHGKSSNPKNH
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggccgtgttctcagcgcttcatctgctcgtcctcttccagctgctcacgtcgtctctg
gctcagcaaaggccgggtcctcggggtgcaccaggagtgccaggaccactgggaccccca
gggaaagacggcatcgacggtaaacctggtcctgctggacttcctggaaagcctgggccg
aagggtaaagcaggtaaacctggggccgcagggagcccgggactgcatggcctccccggt
gtggatggtttgaccggtccggacggtccagctggcaaggacgggccgccaggagcagca
ggtgacccaggaccccccggaccagacggaccccctggcagaggcagaccaggagctctg
ggtcttgctggagctaatggactgccaggtggaccaggacctaagggtccgccggggccc
gagggtcttccaggactccctggtcttccaggcccagacggacctcctggactcccagga
acacttcctgaaggcaatggagatctgctgtgtccggccatctgtcctccgggtcctcct
ggaccgccgggaatgcctggattcaagggtcacacaggtcataaagggagtaagggggag
ctggggaaagatggagagaagggggatcaggggccaccgggaccgccgggaatcccgggg
acagtgggcttacagggctctcgagggctgagaggactgcaggggccggtgggagcagta
ggagacagaggactgccgggcttcagaggaaaacctggggtcgctggcatcattggaaaa
actggtgatgctggtgagagaggaccgcaaggtttcagaggacccaaaggagagataggg
aaaataggccccaagggactccctggaggtgtaggacctaaaggagaaccgggcatcccg
ggcagggacgggaaggatggcacccaagggctggacggtgaaaagggggatgctgggaga
cctggagtagctggtgagaagggacctaacggcctgcctggtttgccgggaaaagctggt
gcaaaaggtgccaaaggaggagttggcggtccaggaaagatgggagaagcagggccgtct
ggagagccaggtatacctggggagatcggcgtcccgggagagagaggagaggctggaccc
cggggggtgactggcggcattggtctagctggaaaccctggaccacaaggtgttaaagga
ttccagggtgtgaaaggggctttaggagaccccggtctgcctggtccgactggaatcaga
ggcggcttcggtgagcggggtccagttggagctggagggcctaaaggagacatgggagtt
gctggaagtgatggtttgccgggagagaacggggagccgggtccgtatggtcccgtcgga
cagaagggagagtccggtaagcgtggcgagcttggagccaaaggagttgtaggaccacag
ggagagaccggagccagaggtgcacctggaaaaccaggaccgatgggattccaaggagag
caaggttttccaggggttcctgggaagactggtgttcctggcaaactggctagtgagcag
cacatcagagaactgtgtggctccatgattgatgatcagatagctcagctcgctgctaac
ctgagaagacctctggctcctggtgctgtgggacggcctggaccaccggggcctccagga
aagcaaggagaagttgggtccatcggtcaccctggatccctcggcccaccaggttataga
ggactgccaggagatctcggtgatcctggtcctcgaggggacgtcggcgagccaggagac
aagggtccagtgggtaaagccatcgaagggcccgctggagaccagggtgaaccgggtctg
cccggcgtgcatggcatcgtcaaagacggccgtgacggagcacctggagatccaggagag
cctggagaagcaggacgagccggcagaccgggacaccagggatcacccggaatctgtgac
acatcagcgtgccaaggagccgtggttcacgggaagtcctccaaccccaagaaccattaa

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