Carassius gibelio (silver crucian carp): 128011821
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Entry
128011821 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
128011821
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128011821
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
128011821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-TRAF
Sina_ZnF
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
PDZ_Tricorn
Prok-RING_4
zf-rbx1
RING_XB3-XBAT31
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
128011821
NCBI-ProteinID:
XP_052450512
LinkDB
All DBs
Position
B23:10878019..10903900
Genome browser
AA seq
1029 aa
AA seq
DB search
MGFDLERFEGPVDPDLICKLCGKVLEDPLSTPCGHVFCAVCALQWLSKVSICPVQCQKIS
RKELNHVLPLKNLILKLDVRCDHRERGCNRVMKLQHLPEHAETCAFSPVRCGNEGCDAVL
SLKDVASHMREGCERRAVEVCEDGCGLALTLKERSEDHSCLQALKTHSGLLQSKVLSLEK
ELKRQSLSFSKRERSLLSKLSALHCELHITALTFQKKITEYKSRIDALSSSWMPLEKGEE
TRSLKVTLHRTSPGSLGFSIIGGRLCGETEQHGDFSDGIYVSKIVENGAADKAGLHVHDR
IVEVNGRSMSVATHDQAVEAFQTAKDPIEVQVLRRTAHNTCKTLDPARGMENSTQTNIML
KTSNHIETLAKLPLQESFRSPSQHQMARRDSPYPSDFHNGLQKDHESRALEYKVDLQRKT
TQDKLGLKLCYKTDDEKSAIYISEIDPEGIAAKDGRVQEGDQIIQINGMDIQSHEMAVTL
LTKVESKNVSLLVARPESQDVSWLENRNSLEDSHLGTLEQQLHQVKEFTTRMLQQSTNEE
DGGTTDTATLLSNQHEKDSGVGRTDESTRNDESSEQDIVGDDQNSLCDTLPESHRKYIYN
QETVESGNMHLSNDSFLSADNGDGGSFLGVPGTACEHFWKLLELKSLVNGNSPQGFLEHN
APLYEKGVNVDCDDREIRMLNEELLNIELECLSIIQAHRLQAEGGGQQAKKPNAKDFSEQ
VHQDLINNQVDNEGSTSAYNTGESCSSLHPTLEPDSLEFQRMVAGDMGKGSPMHRRNSTT
ACSKHNLSPIQEISPTKSLPGDPEVTNQGKRKSKKKNPRKSLLTSLRHSSYKNTYIPAHA
QHYQSYMQLIQQKSAVEYAQSQVSLASLCKNAETPPTESRLKTGWKVKIRSDGTRYITKR
PIRDQLLKERALRIREERCSVTTDDDAASELKLGRYWNKEERKQHAARAKEQRQRRELMK
QCCIESKEQAGAMDNKEPDIIQLSRKKMMKRRNKRIFDNWMTIQELLTHGTKSTDGTRLY
NSFLSVTTV
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctagagcgtttcgaaggtcccgtggacccggacctaatctgtaaactg
tgtgggaaagttctagaggatcctctcagcactccgtgcggacatgtcttctgcgccgtc
tgcgcgctccagtggctctccaaagtcagcatctgccctgtccagtgccagaagatctcc
aggaaagagctgaaccacgtcctgccactaaaaaacctcattctcaagctggacgtcaga
tgcgaccaccgtgaacgaggctgcaaccgggtgatgaagctccagcatctgccagagcac
gcggagacctgcgcattctctccggtcagatgcgggaatgaaggatgcgacgcggtgctc
agcttgaaggatgtggcttcgcacatgcgggagggatgcgagcgcagggccgtggaggtc
tgtgaggacggatgtggactcgcgctgaccctcaaggagaggtccgaggaccacagctgt
ctccaagctctcaagacacacagcggtctcctccaaagcaaagtgctgagtctggagaag
gagctgaagcgccagtcgctgagcttcagtaagagggagagatcgctcctctccaaactc
tccgcgctccactgcgagctgcacatcacggcgctcacatttcagaagaaaatcaccgag
tacaagagcaggatcgacgcgctgtcgagcagctggatgcccctcgagaagggtgaagaa
acaaggagcctcaaagtcaccctccacagaacatcaccaggatctcttggattcagtatc
attggaggaagattgtgtggggaaacagagcagcatggggatttcagtgatggcatctat
gtatccaaaatagtggaaaacggagcagctgacaaggccggactgcatgttcatgacagg
atcgttgaggtaaatggaagaagcatgtctgttgccacccatgatcaagcagtagaggct
ttccaaactgccaaagaccctattgaggttcaggtactgcgccggacagcacacaatacc
tgcaagactcttgacccagcccgaggaatggaaaacagtactcagaccaacattatgctg
aaaacctcaaaccatatagagactttggccaagttaccattgcaggagagtttccgttca
ccttcacaacatcaaatggcaagacgtgactcaccttacccctcagacttccacaacggt
ttacagaaagaccatgagagtagagcactggaatacaaggtggatctgcagaggaaaacc
actcaggataagcttggcctgaagttatgttacaagacggatgatgagaagtccgccatt
tatatcagcgagattgatccagaaggaattgcagcaaaagatggcagagtccaggaagga
gaccagattatccagatcaatggaatggacatccagagccatgagatggcagtgacactt
cttaccaaggtggagagcaagaatgtctccctcctagtggctcgaccagaaagtcaggat
gttagctggttggaaaatagaaacagcttagaagactcgcacttgggcacactggagcag
caacttcaccaggtcaaggagttcactacacgtatgctgcagcagagcacaaatgaagaa
gatggcggcactacagatacggctactttactgtccaaccagcatgagaaagacagcggt
gtaggccgcacagatgaaagcactcgtaatgatgaaagctcagagcaggacatcgtgggg
gatgaccagaattccctctgtgacacgctcccagaaagccacaggaagtacatctataat
caggaaactgtcgaaagtggcaacatgcacctaagcaatgactccttcctttcagctgac
aatggagacggtggaagcttccttggtgtacctggcacggcatgtgaacatttctggaaa
ctgcttgaattgaaatctctggtcaatggtaacagtcctcagggatttctggagcataat
gccccactgtatgaaaagggggttaatgtagactgcgatgatcgggagattcggatgctt
aatgaagagttgcttaacattgagctggaatgcctgagtatcatacaagcacacaggctt
caggctgaaggtggtggtcaacaagccaaaaaacctaatgccaaggacttttctgagcaa
gtccatcaggacctcatcaataaccaagtggataatgaaggctctactagtgcttacaac
actggagagagctgctcgagtttacatcctactctggaaccagattctcttgaattccaa
agaatggttgctggagacatgggtaaaggttctccaatgcatagacgcaactcaacaaca
gcatgctccaaacataacctctctcccattcaggagatcagccctaccaagagtttacct
ggagatccagaggttacaaatcaggggaaacgaaagagtaagaaaaagaacccaaggaag
agtcttttgacatccttgcgtcattcgtcgtacaagaatacctacatcccagcccatgca
caacattaccaaagctatatgcagcttatccagcagaagtcagctgtagaatatgcccag
agtcaagtcagcttagccagcctgtgcaagaatgcagaaaccccccccacagagtccagg
ctcaagacggggtggaaggtaaagatccgtagtgatggaacaagatacatcaccaaaagg
cctatcagggaccagcttctgaaagagcgagccttgcgcattcgagaagaacgctgcagt
gtgactacagatgacgatgcagccagcgaactaaaactgggtcgatactggaacaaggag
gagcgcaaacagcatgcggcacgggccaaagaacagcgtcaacggcgggaactcatgaag
cagtgctgcatagagagcaaagaacaagcaggagcaatggacaacaaggagcctgatatt
atccaacttagccgtaaaaagatgatgaagaggaggaacaagaggatatttgataattgg
atgaccattcaggagctgctgacacatggcacgaagtccacagatggtacaagactatat
aattcctttctttctgtgactacagtataa
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