Carassius gibelio (silver crucian carp): 128011839
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Entry
128011839 CDS
T08819
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128011839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128011839
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128011839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
AAA_16
Motif
Other DBs
NCBI-GeneID:
128011839
NCBI-ProteinID:
XP_052450548
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Position
B23:complement(19429052..19458619)
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AA seq
683 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEEMPTSPSIAGTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPQRA
LDFILTEENTNTHALPARTNPQPEPITTAAPQKAKAREASESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVVAPSVRRGPSPEVTAAPTTETPSKPSAVNEDSAAPTPTRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
ISKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTKSKVADLTAWYTGPCLLEQIDAFKPPQ
RSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEAL
DWAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIRACTRFRARILLFNIELPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTHRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
atgtacggtcagtcagtggaagatgactactgcatctctcctgccactgctgcacagttt
atctactcgcgtcaagactcgaggcaggctcgacatgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagatgccaacatctccttccattgcaggcacactagaccca
ctacaacaaggtcggttgtattcctgtttggatcagatgagagctgtgctgggagattca
attccagactccacactgactcaggcagctctgaaatatgactgtgaccctcaaagagcc
cttgattttattctaactgaggagaacaccaatacacacgcccttccagccagaaccaac
ccacagcccgagcctatcaccacagctgcaccacagaaagctaaagcacgggaggcatca
gagagtcgtgttgaagcagaggttgtcccaaaggttgcccgcatgactgtgtcaggcaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaacggagtagttgccccatca
gttcgtagagggccgagtccagaggtcactgctgcaccaaccacagagacaccatccaaa
ccatcggctgtgaatgaagactctgccgccccgaccccgactcgaccagctggaaagagc
aaacagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgcttctc
aacctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctgtta
tatctactggggaacgttaataagagaaccatgcataaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcttatgcgtgggtactggacgagacaggagaggagagagac
agaggagtgactatggatgtgggcatgacaaagtttgagaccgactcgaaggttataact
ctgatggacgcaccgggacacaaagatttcattccgaatatgattacaggggctgcacag
gctgatgtggctgtgttagtcgtagatgccagtcgtggggagtttgaggccgggttcgag
gcgggggggcagacccgtgagcacgggctgctggttcgatccctcggagtcacacagctt
gctgttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatc
atctcgaagctcggtcactttctaaagcaggctggttttaaggattctgatgtgttttac
atccctaccagcggcctttcaggagagaatctgactactaagagtaaagttgcagatctt
acagcctggtacactggaccatgcctactggaacagatagatgcgtttaaaccaccccag
aggtcagtggagaagcccttcaggctttgtgtctcagacgtcttcaaagatcagggctct
gggttctgtgtgacggggaagatcgaggctggcttcattcagacaggcgataaagttctg
gccatgcctcctaatgagacctgcacagttaaagggatcactctccatgatgaagcttta
gactgggcggctgctggtgatcacgtcagtctaactgtaactggcatggacatcatcaaa
ataaatgttggatgtatattctgtgatcccaaagagcccatcagagcctgtacaagattc
cgagcaagaattctcctatttaatatagaacttcctgtcacgcaaggcttccccgtactg
ttacattatcagactgtaagcgaaccagccactattaggaagttagtgagtgtattacac
aagagcagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaatgct
gtggtggagattcagacacacaggcctgtggctctggagctctataaggactataaagaa
ctggggcggttcatgctgagatatgtgggctccaccattgctgctggggttgtcactgag
atcaaagagtaa
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