KEGG   Carassius gibelio (silver crucian carp): 128011839
Entry
128011839         CDS       T08819                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    128011839
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgib03019]
    128011839
Messenger RNA biogenesis [BR:cgib03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     128011839
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 HBS1_N GTP_EFTU_D2 MMR_HSR1 AAA_22 DO-GTPase2 GTP_EFTU_D4 AAA_16
Other DBs
NCBI-GeneID: 128011839
NCBI-ProteinID: XP_052450548
LinkDB
Position
B23:complement(19429052..19458619)
AA seq 683 aa
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEEMPTSPSIAGTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPQRA
LDFILTEENTNTHALPARTNPQPEPITTAAPQKAKAREASESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVVAPSVRRGPSPEVTAAPTTETPSKPSAVNEDSAAPTPTRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
ISKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTKSKVADLTAWYTGPCLLEQIDAFKPPQ
RSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEAL
DWAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIRACTRFRARILLFNIELPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTHRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
atgtacggtcagtcagtggaagatgactactgcatctctcctgccactgctgcacagttt
atctactcgcgtcaagactcgaggcaggctcgacatgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagatgccaacatctccttccattgcaggcacactagaccca
ctacaacaaggtcggttgtattcctgtttggatcagatgagagctgtgctgggagattca
attccagactccacactgactcaggcagctctgaaatatgactgtgaccctcaaagagcc
cttgattttattctaactgaggagaacaccaatacacacgcccttccagccagaaccaac
ccacagcccgagcctatcaccacagctgcaccacagaaagctaaagcacgggaggcatca
gagagtcgtgttgaagcagaggttgtcccaaaggttgcccgcatgactgtgtcaggcaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaacggagtagttgccccatca
gttcgtagagggccgagtccagaggtcactgctgcaccaaccacagagacaccatccaaa
ccatcggctgtgaatgaagactctgccgccccgaccccgactcgaccagctggaaagagc
aaacagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgcttctc
aacctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctgtta
tatctactggggaacgttaataagagaaccatgcataaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcttatgcgtgggtactggacgagacaggagaggagagagac
agaggagtgactatggatgtgggcatgacaaagtttgagaccgactcgaaggttataact
ctgatggacgcaccgggacacaaagatttcattccgaatatgattacaggggctgcacag
gctgatgtggctgtgttagtcgtagatgccagtcgtggggagtttgaggccgggttcgag
gcgggggggcagacccgtgagcacgggctgctggttcgatccctcggagtcacacagctt
gctgttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatc
atctcgaagctcggtcactttctaaagcaggctggttttaaggattctgatgtgttttac
atccctaccagcggcctttcaggagagaatctgactactaagagtaaagttgcagatctt
acagcctggtacactggaccatgcctactggaacagatagatgcgtttaaaccaccccag
aggtcagtggagaagcccttcaggctttgtgtctcagacgtcttcaaagatcagggctct
gggttctgtgtgacggggaagatcgaggctggcttcattcagacaggcgataaagttctg
gccatgcctcctaatgagacctgcacagttaaagggatcactctccatgatgaagcttta
gactgggcggctgctggtgatcacgtcagtctaactgtaactggcatggacatcatcaaa
ataaatgttggatgtatattctgtgatcccaaagagcccatcagagcctgtacaagattc
cgagcaagaattctcctatttaatatagaacttcctgtcacgcaaggcttccccgtactg
ttacattatcagactgtaagcgaaccagccactattaggaagttagtgagtgtattacac
aagagcagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaatgct
gtggtggagattcagacacacaggcctgtggctctggagctctataaggactataaagaa
ctggggcggttcatgctgagatatgtgggctccaccattgctgctggggttgtcactgag
atcaaagagtaa

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