Carassius gibelio (silver crucian carp): 128012007
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Entry
128012007 CDS
T08819
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128012007
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
128012007
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
UBA_N4BP1_C
zf-CCCH_4
TNFR_ELAPOR1_6th
Omega-toxin
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
128012007
NCBI-ProteinID:
XP_052450826
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Position
A5:complement(30935646..30953026)
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AA seq
1020 aa
AA seq
DB search
MVLELAAPAGAGPALQRCIPHIQRVFRVRVSCSTAESSCENPNAGSSIIVNIEDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRAAIEYESCAVVQVRDHALELQGGHAQV
MAACAMLQRLKMEHRGCREPQPLPAAAGHDSPEEEEEEDEEAAEDGSSSESDGEARSRSS
SSGGAVSTAGSGEGVTGRKQDLLIATKPHRQLCRSSCLDRPSFSQSNTFQELRADDTRSD
SSQRALAPPTSLAQMPLRQTSDRDYQTKMDFALKLGYSGEQVESVLSKLGSSALINDVLA
ELVRLGNKGDPESQAAVGTAGLMARAMGAKEAISPEASLEEDSSDTYDNLRPIVIDGSNV
AMSHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRKLEKE
KILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLL
MYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKY
YHPERANQSQRAVADELRAFAKLSAVKTMSEGALAKCGTSGSSAKGDSSSEAKRVAPKRQ
SDPSIRSVACEQEERLCPMRKAEASSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVP
GSLHFTHSSLEHAGSVQYPPILVTNSQGASVAYGEPFPKYDSVVSDHGYYSMLSDFSTMS
LQDSFCSLEQPEPVGVGGGYPGRASMCPEPGRSHSSDSFSSYSGEMYLNSMEGSLDDSMK
GPPSQSQTQPLVQTRLQAFAHGFHHEALTRVQSYGTDEPKPGPRKQSSAHLAPHTQHPVV
GSRSSCPGDYPPLPQNVLPSASPSQQGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQ
HASWDPLPCGNEPYSYGSYGLTGGLMPCCERVMVRSMPEKMEQIWRSPWDSVPPPPPSAR
GPAEEPQERHPIPEHQYQTYRNLCNIFPAFVVHLVMEENPHMTDPQQLAAVIVTKLRSCH
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcgccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgggtccgagtgagctgcagcaccgcagagtccagctgcgaa
aatcccaacgccggctccagtatcatcgtaaacatcgaggacggcaaggaagaagattgc
actaaagctaaagagtacattgtgtcactgattagtcctgtgcataagcaccgtgagcgt
ttgactctttggctgcagcggcgactgcatgccctacgtgcagctattgagtacgagagc
tgtgctgtggtgcaggtgagggaccatgcactggagcttcagggaggtcatgcacaggta
atggctgcatgcgccatgctgcagcgcctgaagatggagcatcgcggctgccgtgaaccc
cagcccttgcccgctgctgctggccacgactctccagaagaagaggaggaggaggatgaa
gaagctgctgaagacgggagtagttctgagagcgatggcgaggcaaggtcacggagcagt
agttctggtggagccgtcagcacagcagggtcaggagaaggagtgaccggaaggaagcag
gacctgctcatagcaaccaaacctcaccggcagctatgccgctcatcctgtttggaccgt
cccagcttcagtcagagcaacacctttcaggagttacgtgcagatgacacccgctctgac
tcctcccagagagccctcgctccgcccacctccttggcccaaatgcccttgcgtcaaacc
agtgatcgagattaccaaaccaaaatggactttgctctaaaactgggctactccggagag
caggtggagtctgttttgagtaaactggggtccagtgctctaatcaatgatgtattggcc
gagctggtgcggctagggaataaaggagatccagagagtcaggcagcagtgggcaccgcc
ggtttaatggcacgggcaatgggagccaaagaagccataagccctgaggcatctctggag
gaagactcatcagacacgtatgacaacctccgacctatcgtgattgatggatccaatgtt
gccatgagccatggaaacaaagaggtgttctcatgcctgggcattcaactggctgttgat
tggttcctggagaagggccacaaagacatcacagttttcgtcccagcatggaggaaagaa
cagtcaagacctgatgcaccaatcaaagatcaggagatcctgcggaaattagagaaggaa
aagatccttgtcttcacaccgtctcgcagagtccaaggccgtcgagtggtttgctacgat
gaccgttttattgtcaagctggcctgcgactcagacgggatcattgtgtccaacgataac
taccgagacttgcagaatgagaaaccggagtggaagaaatttattgaggaacgactcctc
atgtacagcttcgtcaacgacaagttcatgcctcctgatgaccctttagggagacacgga
cccagtctggaaaattttctccgtaaacgaccagtggttccagagcacaagaagcagccg
tgtccttatggtcagtacagcaaaagtaagaagtgcacctacggccataagtgcaagtac
taccacccagaaagagccaaccaatcacaacgggctgtcgcagatgagctcagagccttt
gccaaactctctgctgtaaagacaatgagtgagggggcacttgccaaatgtgggacctct
ggttcttctgccaagggagatagtagctcagaggcaaagcgagtggcacccaagcgccag
tctgaccccagtatccggtcagttgcatgtgagcaagaagagagactctgtccaatgcgg
aaggccgaggccagttctgtaccgtctttagtgtcagcacttagcgttccaactatgcca
ctgacgaaaagtcacgctgctggcgctctgaacacacgctcagcgagcagccctgttcca
gggtctctgcacttcacccacagctcgcttgaacacgcaggcagtgtccagtatcccccc
atcctagtcaccaatagccagggcgcctctgtggcttacggtgagccgttcccaaagtat
gactctgtggtaagcgaccatggctactattcaatgctcagtgacttctccaccatgagc
ctccaagacagtttttgcagtcttgaacagccagaacctgtaggggttggtggaggatat
ccaggaagagccagcatgtgtccagaacctggccgaagccattcatcagactccttctca
tcctacagtggagagatgtacctcaactcaatggagggcagcctggatgacagcatgaaa
gggccaccttcgcagtcccagacacaacctttggtgcaaacgcgccttcaagcctttgct
cacggtttccaccatgaggccttgacacgtgtgcagagctacggaacggatgaacccaaa
ccgggtcctcgaaagcagtcctccgcccacctagcaccacacacccaacacccagttgtt
ggcagtcgatccagctgcccaggagactaccctcctctcccccaaaatgtgctgccttct
gccagcccctcacagcagggtcgatccttgggcatgactcgaatggacagcatctctgac
tcacggctctacgagagcaacccgctgcgccaaaggagacctcctctttgcagagagcag
catgccagctgggaccctttgccgtgtggtaatgagccctacagttatggaagttatggt
ttaacgggaggtcttatgccttgctgtgaaagggtgatggtccgcagcatgcccgagaag
atggagcagatctggaggtccccatgggatagtgtgccgcctccaccgcccagtgctcgt
gggccagcggaggaaccccaagagcggcaccctattccagaacatcagtatcaaacctac
cgaaacctctgtaacatcttcccggcatttgtggtccatttggtcatggaggagaaccct
cacatgaccgatccccagcagctggctgccgtcattgtcaccaaactgcgctcttgccac
taa
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