Carassius gibelio (silver crucian carp): 128013150
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Entry
128013150 CDS
T08819
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04140
Autophagy - animal
cgib04148
Efferocytosis
cgib05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128013150
04148 Efferocytosis
128013150
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128013150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgib04131
]
128013150
Membrane trafficking [BR:
cgib04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
128013150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_HPS5
WD40_WDHD1_1st
zf_RING_Vps8_fungal
TPR_7
Vps39_1
Beta-prop_EML_2
TPR_19
zf_RING_Vps8
TPR_17
zf-RING_5
Beta-prop_IFT140_2nd
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
128013150
NCBI-ProteinID:
XP_052451847
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All DBs
Position
B24:complement(14665782..14691494)
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AA seq
856 aa
AA seq
DB search
MAEVEEQGRKLSEESTDESEEEDTEEEPKLKYERLTNGVTEILQKDAASCMTVHDKFLAL
GTHFGKVYLLDIQGNVTQKFEISSVKINQISLDESGDHVGICSEDGKVQVFGLYTREGFH
ENFDCPIKVVALHPQFSKSNNKQFVTGGNKLLLYEKNWLNRWKTSVLHEGEGNITSVKWR
ANLIAWANNVGVKIYDISSKQRITNVLRDNTSLRPDMYPCSLCWKDNATLIIGWGSSVKI
CVVKERDPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLFYVKENSEHMEEEEEF
RTRPRLDIIQPLPEGCEEISSDALTVRNFQENQCRDYRLEHSEGESLFYIISPKDIVVAK
ERDQDDHIDWLLEKKKYEEALMAAEISFRNIKRHDVQKIGMAYINHLVERGDYDAAARKC
QKVLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFAT
LIREWPGELYNNMAIVQAVNEHLKKDPTNSTLLTTLAELYTYDQRYDRALEIYLKLRHKD
VYQLIHKHNLFSAIKDKIVLLMDFDKEKAVDMLLDNDDKISMDKVVEELKDRPELLHVYL
HKLFKRDHHKGQKYHERQISLYAEYDRPNLLPFLRESMHCPLEKALEICQQRHFVEETVF
LLSRMGNCRRALQMIMEELADVDKAIEFAKEQDDRELWDDLISYSIDKPPFITGLLNNIG
THVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQRMHRT
QKRGVRVDEENICESCHTPILPSDTAQAFGVVVFHCRHMFHKECLPSPGNVAGIQYCNIC
SAKRRGPGSGILEMKK
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggaggagcagggaagaaaattaagtgaagaatccacggatgagtcagag
gaggaggacacagaggaggagcctaaactgaagtacgagaggctgaccaatggcgtgaca
gagatcttgcagaaggatgcggccagctgcatgacggtgcatgacaagttcctggctctt
gggacacactttggaaaggtttaccttttggatattcaaggaaatgttacacagaagttt
gaaattagttcagtgaaaataaaccagatcagtttggatgagagtggtgatcatgttggc
atctgctctgaagatggaaaggtgcaagtgttcggcctgtacactagggagggcttccat
gaaaactttgactgtcccatcaaggtcgtggcgctacaccctcagttcagcaaatccaac
aataaacagtttgtgactggaggaaacaagcttttgctttatgagaagaactggctgaac
cgttggaagacctctgttctacacgaaggagagggaaacatcaccagtgtgaaatggaga
gccaacctcattgcctgggcaaacaatgtgggtgtgaaaatttatgacatcagcagtaaa
cagcgcatcactaatgtgttgcgggacaacaccagtcttaggccggatatgtacccctgc
agtctgtgctggaaagacaacgccacactgatcatcggctggggctcttctgttaagata
tgtgttgttaaagagcgtgacccaacagaaatgagagatctacccagtcgctacgttgag
attgtgtcagcatttgagaccgagttcttcattagtggactggcgcctttggccgatcag
ctggtcactctgttctatgtcaaggagaactcagagcacatggaggaggaggaggagttc
agaacacggccccgtttagacatcattcagccgttacccgagggctgtgaggagatctca
tcagatgctctcactgtacgcaacttccaggagaaccagtgcagggactaccggctcgaa
cactctgagggagagtctctgttctacatcatcagtcctaaagacattgtagtggctaaa
gaaagagaccaggatgaccacatcgactggcttctggagaagaagaaatatgaagaagca
ctgatggctgcagagatcagcttcagaaacattaaacggcatgatgtacagaaaattgga
atggcgtacatcaatcatctggtggagagaggagattatgatgcagctgccagaaagtgt
caaaaagtgcttggaaagaacatggatctctgggagaatgaagtgtacaggtttaaaacc
attggacagttgaaagccatcagtcagtacttaccaagaggagaccttcgtcttcgaccc
gcaatttatgagatgatacttcacgagttcctcaagactgactatgagggttttgccaca
cttattcgcgagtggccaggagagctgtacaacaacatggctatagttcaggcagtgaat
gaacacctgaagaaggaccccaccaacagcacgcttctcaccacactggccgaactctac
acatatgatcagcgttacgatcgcgcgctggagatctacctgaaactgagacacaaagat
gtttaccaactcattcacaaacacaacctattctccgccatcaaagacaagattgtcctg
ctcatggatttcgacaaagagaaagctgttgacatgctgctggataatgatgataaaata
tcgatggacaaagtggtggaggaattaaaagacagacctgagctgttgcatgtgtatttg
cataagctgtttaagcgggaccatcataaggggcagaagtaccatgagaggcagatcagt
ttgtatgctgagtatgatcgacccaacctactgcccttcctcagagagagcatgcactgc
ccactagagaaggctttggaaatctgtcaacagaggcactttgtagaagagaccgtcttc
ctgctcagtcgtatgggaaactgcagacgagccctgcagatgatcatggaggagctggcg
gatgtagacaaggccattgagtttgctaaagagcaggatgacagagaactctgggacgat
ctcatctcttactctatagacaaaccaccatttatcacaggcctcttgaataacattgga
acccatgtggaccccatcctgctcattcaccgcattaaagaagggatggagattcctaac
cttagagactcactggttaagattctacaagactacaatctacaaatcttactgagagag
ggctgtaagaagatcctggtggcagattcactgtctcttctacagaggatgcacaggaca
cagaagagaggagtgcgggtggatgaagaaaacatctgtgaatcctgccacactcctatt
ttaccatcagacacggctcaggcatttggtgtggtggtgtttcactgcagacacatgttc
cacaaggagtgtctgccgtcccctgggaacgtcgcaggaatacagtattgtaacatctgc
agtgcaaagcggagaggaccaggcagtggcatactggagatgaagaaataa
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