Carassius gibelio (silver crucian carp): 128013657
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Entry
128013657 CDS
T08819
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgib04040
]
128013657
Ion channels [BR:
cgib04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128013657
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
128013657
NCBI-ProteinID:
XP_052452743
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All DBs
Position
B24:21087665..21103610
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AA seq
800 aa
AA seq
DB search
MHISALPYSLSVIMAALYQGTDSSSPDKYLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEEKRHGELNINCVDVLGRDAVTISIENENLDILQLLLDHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTCLKILYVLSVALMWP
LLSICYLLGPRSRVGQVIHTPFIKFIIHSASYFTFLLLLNLYSLVYNEDKKNTMGPPLEL
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHSKFNN
VGEEPFEDRKNWDAFHPLLVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEF
GKFLGLFLLVLISFTIGLTQLYGKDKDLSSSKNITKDCAGIFCREQSNDTFHTFMGTCYA
LFWYIFSLAHVALFVTRISYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKSFRQIA
NHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLVISLSKWICSHTSTGKVKR
QNSLKEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRN
EMRDLLGFRTSKYAMFYPRN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgctttgccgtactctctctccgttataatggctgctctatatcagggc
acggactcgtcttctccggataaatatctggcgttaaaagacgtcagagaggtgaaggag
gagaccactctggacgagaagctctttctgctggcctgcgagaagggagactactacatg
gtaaagaaacttctggaggagaaacgacatggtgaattaaacattaactgtgtagatgta
cttgggagagatgcggtcaccatttcaatcgaaaatgagaatctagacattttgcagttg
ctcttggatcatggctgtcaggccacagatgcattattagtggctattgattcagaagtg
gtaggagcagttgacatcctgctaaaccatcggcccagacgttcctctaaaccttctatt
gcgaaattgatgcagcgcattcaaaacccagagtattccaccaccatggatgttgctcca
gtcattcttgctgcccaccggaacaattatgagattttgaccatgctattaaaacaagac
atctctctgccacgaccccatgctgtagggtgcgagtgcaccctctgtaatgccaagaac
aagaaggacagtctccgtcactcaaggttccgtctagatatctatcgatgccttgctagc
ccatccttgatcatgcttacagaagaagaccccattctgagagcattcgagctcagtgct
gatctgaaagagctaagcctggtggaagtggagtttcgcaatgattatgaagaacttgcc
aagcaatgcaagatgttcgccaaggacttgctggctcaggcccgcaactctcgcgagctg
gaggtcatactgaaccacacgtccagtgaggaccacgtagacaagagaggcctactagag
gaacgcatgaacctcagtcgcctcaaactggccataaaatacaaccaaaaggagttcgtt
gcccagtccaactgtcagcagttcctgaacacggtgtggtttggcgagatggcgagctac
cgccgcaagcacacatgcttgaagatcctgtatgttttgagcgtggcgctgatgtggcct
ctgctgtccatctgttacctgctgggaccccgttctcgagtgggccaggtcatccacaca
ccttttatcaagttcatcatccatagtgcctcctacttcacctttctgctccttctaaac
ctttattcactggtctacaacgaggataagaagaacaccatgggtccccctttggagctg
atagactaccttctcattctctggattataggcatggtgtggtctgatgtgaagcgtctg
tggtatgagggattggaggacttcctggaagagtcacgcaaccagctgagttttgtcatg
aactcgctttatttggccacttttgccctaaaagtggtggctcacagcaagtttaataac
gttggtgaagagccatttgaagacaggaaaaattgggatgcgttccatcccctcttggtt
gccgaaggcctttttgcgttcgccaatgttctgagctatctccgtctgttcttcatgtat
accaccagctccatcttggggcctttacagatctccatgggccagatgctacaagagttt
ggcaagtttcttggcttattcttgctcgtactcatctctttcaccattggtctgacacag
ctctatggaaaagacaaggacctatccagctccaaaaatataaccaaggactgcgcgggc
atcttctgtcgagagcagagcaacgacacctttcacacgtttatggggacatgttacgcc
ctcttctggtacattttttccctggcacatgtggctctgtttgttacaaggattagctac
acagaggagctgcggtcgtttgttggtgctcttattgtcggtacctacaacattgttgta
gtcatcgttctcaccaaactcctagtggccatgctgcataagagcttcagacagattgct
aaccatgaagataaggagtggaagtttgcccgggccaagctgtggctcagctacttcgat
gacaagtgcacactgcctccacctttcaacatcctaccctctcccaagaccgtgtgttac
ttggtcatcagcttgagcaaatggatttgttcccacacctccacaggcaaggtcaaaaga
caaaatagcctcaaggaatggaagaacctgaagcagaaaagagatgagaactatcagaag
attatgtgctgtcttgttcaccgttacctgacctccacaaggcagaagatgcagagcact
gaccaggccacggtagagaacctcaatgatctgcggcaagacctctccaaattccgcaat
gaaatgagagatcttttgggcttccgcacctccaaatatgccatgttttaccccagaaac
taa
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