Carassius gibelio (silver crucian carp): 128014013
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Entry
128014013 CDS
T08819
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128014013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
128014013
03036 Chromosome and associated proteins [BR:
cgib03036
]
128014013
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128014013
Coactivators
SAGA/TFTC/STAGA complex
128014013
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
128014013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
VP4_helical
Motif
Other DBs
NCBI-GeneID:
128014013
NCBI-ProteinID:
XP_052453204
LinkDB
All DBs
Position
B25:12981151..13024457
Genome browser
AA seq
965 aa
AA seq
DB search
MMSLRFPQCLSRKTTHARCAFLKRLSKMAGVPDPLEDMLYSEVDEKAVSDLVGSLESQLG
GQNKAVGPQGDTRRPSNALNPHLGKLLPAQVGTTLEQQRQPERNQEGNSQENGPDRIPAS
GAVPSTANLASTSANPVTAANRLQYHSSIPSTCSSDAAPTDSHPKTNHIASAVQSVPARI
QTVNGSSGMLNSSVIASAPASVNGIDIASGVGNVKSNMSAPTSTNTAFVPAQPNSTLPHA
NVSLDSQANPTIALHRPPNTITSVVHNGGDPKVSGLPVQATGLVSFTNTEPKSDPQNQIK
AIVPNQLPGTPVGLHPSTSAQIIVSSSPVVTSLPVASTPSALAKPAATALVGQPTTLLRP
GAPIQGTVTATATPLQRPGAPTTQLIVRPQQQTTIQLPPGFTIPPGMVLVRTEAGQLALV
PQQVLAQAKAQNQNKGTLSPRPATPTAGTTFRVTTPVAQQKTAVVTITSAQKPTTTVITA
GARVQPAPQTVLKPSVTPQSPISTAAAAPANRGPVLSQEMQENVKKCKNFLATLIKLASH
NSPSPETSRNVKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYLIPFLKKSLPALRLTLL
NSQQSLTQLSQTSATSTPVTVNTIKAPAPSTLPTSVSTIRPAAATMAVKRPGVQVTPTRM
PVVITQTVRAQGPVGTPLQLRSPMGVAVQAAANQKQKLNDPGGGTFRDDDDINDVASMAG
VNLNEENARILATGSELVGTQIRSCKDEAFLPASLLHKRLLETAKKFGVTEMSMETVTLI
SHATQSRLRSVLEKVSAVAQHRVDSCKDEDLYEQTSDVRTQLKFFEQLEKIEKQRKDDEE
RELLMKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDS
PGASAGAEFPVGSSGSATGSTSSSTSSVRQSRQRITRVNLRDLIFCLEQERTTARSMLLY
KALLK
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcattacgtttcccacaatgcctcagcaggaaaacaacgcacgcgcggtgcgcg
tttctcaagcgtctctcaaagatggcgggcgtccctgatccactggaagatatgctctac
tccgaagtggacgaaaaagccgtcagtgacctcgtaggctcgttggaatcgcagttgggt
ggacaaaacaaggcggtcggtcctcaaggcgacactaggagaccctcaaacgcgctaaat
ccacacttggggaaattgctgcccgcccaagtaggaacaacactggagcagcagcgacag
ccagagcgaaaccaggagggaaactctcaagagaacggtccggacagaataccggcgtct
ggggctgtcccgtccaccgctaacctggccagcacctccgcgaatccggttacagccgcg
aaccggttgcaatatcattcatcaatcccatcaacttgttcaagtgacgcagcaccaaca
gactctcaccccaaaacaaaccacatcgcgtctgctgtccagtcggttcccgccagaata
cagactgtgaacggaagcagtggcatgttaaactcttctgttatcgcttctgctcctgct
tctgtaaacggtattgacattgcttcaggtgtaggtaatgttaaaagcaacatgtctgct
cctactagtacaaatactgcttttgtgcctgctcagcccaacagcacactgccacatgcg
aatgtgtcactagatagtcaagcaaaccccaccattgcactgcacaggcctcctaacacc
atcacaagtgtcgtacacaacggaggcgaccccaaagtctcaggattgcccgtgcaggcc
accgggcttgtgtcgttcacaaacacagagcccaaatctgatcctcaaaaccagattaaa
gccatcgtcccgaaccagctccccggaacccccgtagggttacaccccagcacgtccgct
cagattatagtgtcgtccagcccggtggtgacctcacttcctgtggcaagcacgccctct
gcccttgcaaagccagcagcgactgctctcgtaggacagcctacgaccctgttgagaccc
ggtgcgcccatccaggggacggtgactgcgactgcgacacccctgcagcgtccaggggct
cctacgacccagctgatcgtcagaccgcagcaacagactaccattcagttaccgccggga
ttcaccatacctccaggtatggtgctggtacgcacggaggccggtcagctggcattggtt
cctcagcaggtcctggcccaggccaaagctcaaaaccaaaataaaggcaccctgtcacca
agacctgctacacccactgctggaaccactttcagagtcaccacacctgttgcccagcag
aagacagcagtggtaacgattacctcggctcagaagcccaccaccacagtcattacagca
ggggcccgtgtgcagcctgcgccacagacagttctcaagccctctgtgacccctcagagt
cccatcagcaccgctgctgctgccccagctaacagaggccctgtcctctctcaggaaatg
caagagaatgtaaagaagtgcaagaacttcctagcaacactcatcaaactggcatcccat
aattccccctcgccggaaacatctcggaatgtgaaggcgcttgtgcaggatctgctggat
gcaaaaatcgagcctgaggagtttacaaatcgcctgcagacggagctgaaatcatctcct
caaccgtacctgatcccttttttgaagaaaagcctgcctgctctgcgtctgactcttctg
aactcccagcagtctttaactcaactgtctcagacctctgctacatccaccccagtgacg
gtgaacaccattaaagctccagcaccgagcacactgcccacctccgtgtctaccatccgc
ccggctgctgccaccatggctgttaagaggcctggggttcaggttactccgacacggatg
ccggtggtgattacacagacagttcgtgctcaaggtcctgttgggacacccttgcaactg
aggagccccatgggtgtggctgttcaagcggcagccaatcagaaacagaagctgaatgac
cctgggggtgggactttcagagatgatgacgacatcaatgacgtggcgtccatggctggt
gtgaacctaaatgaggagaacgcccgtatcttggctacgggttcggagctggtgggcact
cagatccgttcctgtaaggacgaggccttcctccctgccagcctgctccacaaacgtctc
ctggagactgccaagaagttcggcgtgacggagatgtcaatggagacggtcactctcatt
tctcacgccactcagtccaggctgcgctccgtcctggagaaagtctcggctgttgcacaa
caccgcgttgactcctgcaaagatgaggatctgtacgagcagacgtcggatgtgcggacc
cagctgaagttctttgagcagctggagaagattgagaagcagaggaaagatgacgaagaa
cgggagctgctaatgaaagccgcgaaaagtcgctcgaggcaggaggatcctgaacaggct
cggcttaaacagaaagctaaagagatgcagcagcaggaactcgcccagatgagacagcgg
gatgccaacctcacagcccttgccgccatcggaccccgcaagaaacgcaagcttgattct
cctggggcctcagcaggtgcagagtttcctgtgggctcctccggatcagcgaccggttct
acctcatcctccacatcctcagtccggcagagccgtcagcgcattacccgggtcaacctc
agggacttgatcttctgcttggagcaggagcgaaccacagccaggtccatgctgctctac
aaggcccttctgaagtag
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