Carassius gibelio (silver crucian carp): 128014022
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Entry
128014022 CDS
T08819
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03030
DNA replication
cgib03410
Base excision repair
cgib03420
Nucleotide excision repair
cgib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128014022
03410 Base excision repair
128014022
03420 Nucleotide excision repair
128014022
03430 Mismatch repair
128014022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgib03032
]
128014022
03036 Chromosome and associated proteins [BR:
cgib03036
]
128014022
03400 DNA repair and recombination proteins [BR:
cgib03400
]
128014022
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128014022
DNA Replication Termination Factors
ELG1-RFC complex
128014022
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
128014022
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128014022
Check point factors
HRAD17(Rad24)-RFC complex
128014022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_14
AAA_24
RuvB_N
AAA_16
ResIII
AAA_assoc_2
DEAD
DUF815
PhoH
AAA_7
ATPase_2
TIP49
AAA_19
AAA_5
AAA_30
TniB
AAA_2
DNAX_ATPase_lid
Mg_chelatase
Thioredoxin_6
bpMoxR
Motif
Other DBs
NCBI-GeneID:
128014022
NCBI-ProteinID:
XP_052453224
LinkDB
All DBs
Position
A5:complement(35099442..35105268)
Genome browser
AA seq
334 aa
AA seq
DB search
MASTSKTQAQTRNLPWVEKYRPQKLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQSQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWGLNKDFTTAYNQILQLKTLKGLALHDILTEIHLLIHRVDFPPSIRMGLLIKLA
DIEYRLASGTNEKIQLSSMVAAFQAVRDIVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagtaaaacacaagctcagacgagaaatttaccatgggttgaaaagtac
aggccacagaaattagatgacctcatctcacatcaagacatcctgagcacaatccagaag
ttcatcagtgaagaccgattgcctcatcttctcttctatggacctccgggaacaggaaag
acctctactatactagcgtgtgctaaacagctgtacaaagataaagagttcaactccatg
gtcctggagctcaatgcgtcagatgaccgtggcatagatgtggtgagggggccgatcctc
agctttgccagcacacgaaccatcttcaagaaaggctttaagttggtgatcctggacgag
gcggatgctatgacccaggacgcacagaatgctttaaggagagtcattgagaagttcaca
gagaacacccgtttctgtctgatctgtaactacctctcaaagatcatacctgcgctgcag
tctcgatgcacacggtttcgtttcggccccctgtctcagagccagatgattcccagacta
gagcatgtgatacagcaagagagcattgacatcacaccagatggcatgaaggccattgtg
accctctcaacaggagacatgaggcgatcattaaacattttacagagcacccatatggcc
tatgggaaggtgacggaggagaccgtgtacacatgtactggacatcctcttagatcagac
atcgccaacatactggactggggtctcaataaagacttcaccactgcatataaccaaatt
ctgcagctcaaaactctcaaaggtctggcacttcatgacatcttaactgaaatccatctt
ctcattcaccgcgtggacttccctccctccatccgcatgggcttacttataaaacttgca
gatattgaatatcgtctggcctccggaaccaatgagaagatccagctgagctcaatggtt
gcagctttccaggctgttagagacatcgtagtcagcgatggatag
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