Carassius gibelio (silver crucian carp): 128015484
Help
Entry
128015484 CDS
T08819
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128015484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
128015484
Enzymes [BR:
cgib01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128015484
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128015484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4
zf-C3HC4_2
ANCHR-like_BBOX
zf-B_box
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
128015484
NCBI-ProteinID:
XP_052455306
LinkDB
All DBs
Position
A6:complement(14491529..14506132)
Genome browser
AA seq
684 aa
AA seq
DB search
MSVFAVSGGCYLGRVKMAENMSLLGLEDELTCSICLCLFENPVSLICGHSFCANCLEATW
NERVSSLSCPQCRMVFPSKPELKKNTVLSAVLDAYRIKAGVSEPVKEHFEVKKKDPNAIK
CDNCMEAKAVKTCLTCMASYCEDHVRPHRENAIFRAHQLSDPLPDLMERLCSHHGKLMEF
YCSQHQSCICSTCLQDMHKGCEFITTDERRFKQKTDLTDKLNILEVKTDKNQQVIIQMKE
QQNKLKDLAVTRKRILEAEYRQIREMIDRDEKEAMLAIDKEQEKGQSKLVSLMKKFNENI
EKMSRTKSEINSLLDQSQSLEFLKVSVDLPSVVNFEPYNPRINVEGKEVIAYHSSAVALK
EWITKIMDHPLENRISVLKPEFGKSVLGAGNQFPGILSETPAVLPNPRDMSHMRITSPDR
GPKPKFSGAKQKISSKSANKDQKDHKERKDQKPNKSRNPSKGENPLFSKSMENLLDTAAK
TVDIPDINSPASSPALQNSVKRSDLLKYGTILNFDFRTAHKRISLSENNTKATVSDETAH
YPDIPLRFSVCSQVLCTKGFSQGRHYWEIKMSSNNFCGLGLAYGRIDRKGPSSRLGRNAD
SWCVEWFNIKLSAWHNSVETVLQNPNPSRVGVLLDCDQGSATFYNVQDRAYPFHTFVFPF
TEAVYPAFWIFSNGSSVSLCKLSN
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgttcgctgtcagtggtggatgttaccttggtcgtgtcaaaatggcggagaat
atgtctctgttgggtctagaggacgagttgacttgcagcatctgtttatgtctattcgag
aacccggtgagtttaatctgtggacacagtttctgcgccaactgtctggaagcgacatgg
aatgaaagggtatcatctctgtcctgccctcagtgtcgaatggtgttccccagtaaacct
gaactaaagaagaacaccgtcctcagtgcggtgcttgatgcctatagaattaaagcgggt
gtttctgaacccgtcaaggaacattttgaggtgaagaagaaagatccaaatgcgatcaaa
tgtgacaactgcatggaagcaaaagccgtcaaaacatgtctgacatgtatggcctcttat
tgtgaggatcatgtcaggcctcaccgagagaatgccatttttcgggcccatcaactgtct
gatccactgccagatctgatggagcggctctgttcacatcatggtaaactgatggagttc
tactgcagtcagcaccagagttgcatttgcagtacctgtctacaggacatgcataaaggc
tgtgagtttatcacgacagacgagcggcgcttcaaacaaaagactgacctgactgacaag
ctcaacatcctcgaagtcaaaaccgacaagaatcagcaggttataatacagatgaaggag
caacaaaacaaattaaaggacttggctgttacccgcaaacgtattcttgaggctgaatac
aggcagattagagaaatgattgaccgagatgaaaaagaagccatgcttgctatcgataag
gaacaggagaaaggtcagagcaaactggtctccttgatgaagaaatttaatgagaacatc
gagaagatgagtaggaccaaatctgagatcaacagtctgctggaccagtcgcagtcacta
gaattcttaaaggtctcagtggatttgccctcagtggtaaattttgagccctataaccct
cgcattaatgtggaaggtaaagaggtgatcgcttatcattcctctgcagttgcactgaag
gagtggatcaccaaaataatggatcatccattagaaaacagaatctctgtacttaaacca
gagtttgggaaatctgttcttggtgcaggaaaccagttcccaggaatcctaagtgagact
cctgctgttctgccaaatccaagagatatgtcacatatgagaattaccagtccagatcgt
ggtcccaaacccaagttttcaggagcgaaacagaaaatttcaagcaagagtgctaataaa
gatcaaaaggatcacaaagagcgtaaagaccagaagccaaacaaatctaggaatccctct
aaaggagaaaatcctcttttctccaaaagcatggaaaatttgcttgacactgcagctaaa
actgttgacatacctgacataaattcacctgctagttcaccagctctgcaaaactccgtt
aaaagaagtgacctccttaaatatggcactatcctcaattttgacttcagaacagctcac
aagcggatctcactgtctgaaaacaacaccaaagcgacagtctcggacgaaacggctcac
tatccagatattccccttcgcttttctgtctgttcccaggtgctctgcacaaagggtttc
tctcagggccgtcattattgggagatcaaaatgagcagtaacaacttctgcggattggga
cttgcatatggaagaatcgaccgcaagggtccctctagccgtctggggcgtaatgcagac
tcctggtgtgtggagtggtttaacatcaagctttctgcatggcacaacagcgtcgagacg
gtgctgcagaatcccaaccccagccgtgtgggtgtcttgctggactgtgatcagggaagt
gcaacattctataatgtgcaggaccgggcctaccccttccacacatttgtctttcctttc
actgaagctgtatatccagcattctggatcttctcaaatggttcttctgtctctttgtgc
aagctcagcaactga
DBGET
integrated database retrieval system
